Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   VRA41_RS09360 Genome accession   NZ_CP142105
Coordinates   1787695..1788930 (+) Length   411 a.a.
NCBI ID   WP_065429503.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1782695..1793930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS09330 (VRA41_09330) - 1783161..1785767 (+) 2607 WP_011226710.1 YfhO family protein -
  VRA41_RS09350 (VRA41_09350) - 1786312..1786995 (-) 684 WP_011226711.1 YoaK family protein -
  VRA41_RS09355 (VRA41_09355) rlmH 1787011..1787490 (-) 480 WP_011226712.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  VRA41_RS09360 (VRA41_09360) htrA 1787695..1788930 (+) 1236 WP_065429503.1 S1C family serine protease Regulator
  VRA41_RS09365 (VRA41_09365) spo0J 1788996..1789763 (+) 768 WP_011226714.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42844.17 Da        Isoelectric Point: 4.7061

>NTDB_id=921704 VRA41_RS09360 WP_065429503.1 1787695..1788930(+) (htrA) [Streptococcus thermophilus strain SCB0351]
MKKFNWKKIVAPIAMLIIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKSIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTIAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKIGSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=921704 VRA41_RS09360 WP_065429503.1 1787695..1788930(+) (htrA) [Streptococcus thermophilus strain SCB0351]
ATGAAAAAATTTAACTGGAAGAAAATAGTCGCGCCAATTGCAATGCTAATTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACTGGAGTAAAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTACAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCATGTTGTCGATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAATCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAATCGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAATTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGAATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCGGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.29

98.054

0.601

  htrA Streptococcus gordonii str. Challis substr. CH1

56.796

100

0.569

  htrA Streptococcus mitis NCTC 12261

53.545

99.513

0.533

  htrA Streptococcus pneumoniae TIGR4

53.301

99.513

0.53

  htrA Streptococcus pneumoniae D39

53.301

99.513

0.53

  htrA Streptococcus pneumoniae Rx1

53.301

99.513

0.53

  htrA Streptococcus pneumoniae R6

53.301

99.513

0.53