Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VQ575_RS26100 Genome accession   NZ_CP142104
Coordinates   5767013..5768506 (+) Length   497 a.a.
NCBI ID   WP_039590174.1    Uniprot ID   A0A0B1Z6D3
Organism   Pseudomonas frederiksbergensis strain YE17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5762013..5773506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ575_RS26070 (VQ575_26070) sutA 5762032..5762355 (-) 324 WP_003206813.1 transcriptional regulator SutA -
  VQ575_RS26075 (VQ575_26075) - 5762457..5762882 (-) 426 WP_039590847.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VQ575_RS26080 (VQ575_26080) - 5763097..5764431 (-) 1335 WP_039590177.1 ammonium transporter -
  VQ575_RS26085 (VQ575_26085) glnK 5764465..5764803 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VQ575_RS26090 (VQ575_26090) - 5765217..5765483 (+) 267 WP_039590176.1 accessory factor UbiK family protein -
  VQ575_RS26095 (VQ575_26095) - 5765519..5766796 (-) 1278 WP_039590175.1 sensor histidine kinase -
  VQ575_RS26100 (VQ575_26100) comM 5767013..5768506 (+) 1494 WP_039590174.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VQ575_RS26105 (VQ575_26105) - 5768513..5769727 (-) 1215 WP_039590173.1 aldose 1-epimerase family protein -
  VQ575_RS26110 (VQ575_26110) - 5770048..5772024 (-) 1977 WP_039590172.1 methyl-accepting chemotaxis protein -
  VQ575_RS26115 (VQ575_26115) - 5772211..5773131 (-) 921 WP_039590170.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52968.14 Da        Isoelectric Point: 8.2090

>NTDB_id=921643 VQ575_RS26100 WP_039590174.1 5767013..5768506(+) (comM) [Pseudomonas frederiksbergensis strain YE17]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLMLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLSEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLVE
SEALEVAAIQSVASGVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKGAP
GDDTATAAERVAEARERQQTRQGCANAFLDLSGLRRHCKLSPTDEAWLETACERLTLSLRAAHRLLKVARTLADLQQLER
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=921643 VQ575_RS26100 WP_039590174.1 5767013..5768506(+) (comM) [Pseudomonas frederiksbergensis strain YE17]
ATGTCGCTCGCCATCGTCCATAGCCGCGCCCAAGTGGGGGTCGAAGCCCCTGCCGTTACCGTTGAAGTTCATCTCGCAAA
TGGCTTGCCGTCGCTGACGATGGTCGGCTTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGACTCAATTTCCCAGCGCGGCGCATCACCCTGAACCTCGCGCCGGCAGATCTTCCCAAGGACGGCGGCCGG
TTCGACCTGGCGATTGCCCTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCGACCTTGATGCTGGACGACGTGGAGTGCCT
CGGCGAACTGGCCTTGTCCGGTGCCGTACGACCAGTGCGCGGCGTGCTCCCCGCAGCGCTGGCGGCGCGCAAGGCTGGAC
GCATGCTGATGGTGCCCCGGGCCAATGCCGAGGAAGCGTGCCTGGCGTCGGGGCTGAAAGTGATTGCCGTGGACCACCTG
CTCGAAGCGGTGGCGCACTTCAACGGCCACACCCCCGTCGAGCCCTTCGTGTCCAACGGGCTGCTCTCGGCCAGCAAACC
CTATCCCGACCTCAGCGAAGTGCAAGGCCAGGCTGGGGCCAAGCGCGCATTGCTGATCGCGGCGGCGGGGGCTCACAACT
TGTTGTTCAGCGGCCCGCCGGGCACAGGCAAGACATTGCTGGCGAGCCGTTTACCGGGATTGTTGCCGCCGCTGGTCGAA
AGCGAAGCCCTGGAAGTCGCGGCGATACAGTCCGTCGCCAGTGGCGTGCCGCTAAGCCATTGGCCGCAACGGCCGTTTCG
CCAGCCACATCATTCGGCATCCGGCCCGGCGCTGGTGGGTGGCGGGTCGAAGCCGCAACCGGGGGAGATCACCCTCGCCC
ACCACGGCGTACTGTTCCTGGATGAGTTACCGGAATTCGACCGAAAGGTCTTGGAAGTCTTGAGGGAGCCCCTCGAGTCG
GGACACATCGTGGTGTCGCGTGCCCGGGATCGCGTGCGCTTTCCAGCGCGCTTCCAACTGGTCGCGGCCATGAACCCGTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCCGCTGCTGCTGCACGCCGGACATGGTGCAGCGGTATCGCAACAAGCTGT
CCGGTCCGCTGCTCGACCGTATCGACCTGCACCTGACCGTGGCGCGCGAAGCCACGGCGCTGAATCCCAAGGGCGCACCC
GGTGACGATACCGCCACAGCAGCCGAGCGCGTGGCCGAAGCCCGTGAGCGCCAGCAAACCCGCCAAGGCTGCGCCAACGC
CTTCCTCGACCTGTCGGGGTTGCGCCGTCATTGCAAACTGTCCCCGACCGACGAAGCATGGCTGGAAACCGCCTGCGAAC
GATTGACCCTGTCGCTACGGGCCGCCCATCGCCTGCTGAAGGTCGCCCGCACCCTGGCCGACCTTCAGCAATTGGAACGA
ATCAGCCGCGAGCACCTGGCCGAAGCCCTCCAATACCGGCCCGCAACGCCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1Z6D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.23

100

0.469