Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VQ575_RS02180 Genome accession   NZ_CP142104
Coordinates   478576..479640 (+) Length   354 a.a.
NCBI ID   WP_039592425.1    Uniprot ID   A0A0B1Z2H3
Organism   Pseudomonas frederiksbergensis strain YE17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473576..484640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQ575_RS02170 (VQ575_02170) - 474489..475757 (+) 1269 WP_039592422.1 malic enzyme-like NAD(P)-binding protein -
  VQ575_RS02175 (VQ575_02175) - 475923..478367 (-) 2445 WP_198727004.1 penicillin-binding protein 1A -
  VQ575_RS02180 (VQ575_02180) comM 478576..479640 (+) 1065 WP_039592425.1 pilus assembly protein PilM Machinery gene
  VQ575_RS02185 (VQ575_02185) - 479640..480206 (+) 567 WP_039592426.1 PilN domain-containing protein -
  VQ575_RS02190 (VQ575_02190) pilO 480203..480826 (+) 624 WP_039592427.1 type 4a pilus biogenesis protein PilO -
  VQ575_RS02195 (VQ575_02195) - 480823..481350 (+) 528 WP_039592428.1 pilus assembly protein PilP -
  VQ575_RS02200 (VQ575_02200) pilQ 481364..483436 (+) 2073 WP_039592429.1 type IV pilus secretin PilQ Machinery gene
  VQ575_RS02205 (VQ575_02205) aroK 483441..483959 (+) 519 WP_039592430.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38009.56 Da        Isoelectric Point: 4.9070

>NTDB_id=921617 VQ575_RS02180 WP_039592425.1 478576..479640(+) (comM) [Pseudomonas frederiksbergensis strain YE17]
MLRLFNKKAHALLGIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTPLRNVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVVGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLSTQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYLGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FASMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=921617 VQ575_RS02180 WP_039592425.1 478576..479640(+) (comM) [Pseudomonas frederiksbergensis strain YE17]
GTGCTACGACTCTTCAATAAAAAAGCCCATGCGCTTCTGGGGATCGACATCAGCTCGACGTCGGTGAAGCTGCTCGAATT
GAGTCGCCAGGGTGATCGTTATCGCGTCGAGTCCTATGCGGTCGAACCGCTGCCGGCCAATGCGGTGGTCGAGAAGAACA
TTGCCGAGCTCGAAGGCGTGGGGCAGGCATTGTCGCGGGTGCTCGCCAAGGCGAAGACGCCCTTGCGCAACGTGGCGGTG
GCCGTCGCCGGCTCGGCGGTCATCACCAAGACCATCGAAATGGATGCCGGGCTGTCCGATGACGACATGGAAAACCAGCT
CAAGATCGAAGCCGACCAATACATTCCGTACCCGCTGGATGAGGTGGCGATTGATTTCGAAGTCGTTGGCGTTTCGCCTC
GCAGCGCCGAGCGGGTAGAGGTGTTGTTGGCGGCGTGTCGCAAGGAAAATGTCGAGGTCCGCGAGGCGGCGCTGGCGCTC
GCCGGATTGACCGCCCGCGTGGTCGATGTGGAGGCCTACGCCCTGGAGCGTGCCTTCGGCCTGCTTTCCACCCAATTGGC
CGCGTCCCAGGAACGGTTGACCGTGGCGGTCGTCGACATTGGCGCCACGATGACGACCCTCAGCGTGTTGCATAACGGGC
GCATCATCTATACCCGCGAGCAGTTGTTCGGTGGACGCCAGCTTACCGAGGAAATCCAGCGTCGCTACGGCCTGACGCCG
GAGCAGGCCGGCCTGGCGAAAAAGCAAGGTGGCCTGCCGGACGACTATCTTGGCGAAGTGTTGCAGCCGTTTCGCGAAGC
ACTGGTGCAACAGGTGTCGCGCTCGCTGCAGTTTTTCTTCGCTTCCGGCCAGTACAGCGCGGTGGATCACATCCTGCTGG
CCGGCGGTACGGCTTCGGTCGCGGGCCTGGATCGGTTGATCGAGCAGCGCCTGGGCACGCCGACCCAAGTGGCCAATCCG
TTCGCCAGCATGGCCTTGAGCAGCAAGGTCAACGCGGGCGCCCTGGCCAGTGACGCGCCGGCGCTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1Z2H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

47.175

100

0.472