Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV24_RS12490 Genome accession   NZ_AP025497
Coordinates   2778334..2778897 (-) Length   187 a.a.
NCBI ID   WP_017055929.1    Uniprot ID   A0A109DAW8
Organism   Vibrio kanaloae strain LMG 20539     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2773334..2783897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS12470 - 2773726..2774058 (-) 333 WP_017055933.1 hypothetical protein -
  OCV24_RS12475 pilO 2774051..2774698 (-) 648 WP_150878702.1 type 4a pilus biogenesis protein PilO -
  OCV24_RS12480 - 2774698..2776140 (-) 1443 WP_150878704.1 MSHA biogenesis protein MshI -
  OCV24_RS12485 csrD 2776143..2778158 (-) 2016 WP_046224489.1 RNase E specificity factor CsrD -
  OCV24_RS12490 ssb 2778334..2778897 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  OCV24_RS12495 qstR 2779176..2779823 (+) 648 WP_137025924.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV24_RS12500 galU 2779981..2780853 (+) 873 WP_150878706.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV24_RS12505 uvrA 2781003..2783834 (+) 2832 WP_150878708.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20632.76 Da        Isoelectric Point: 5.2358

>NTDB_id=92158 OCV24_RS12490 WP_017055929.1 2778334..2778897(-) (ssb) [Vibrio kanaloae strain LMG 20539]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQSQQQYSAPAQQQP
KAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=92158 OCV24_RS12490 WP_017055929.1 2778334..2778897(-) (ssb) [Vibrio kanaloae strain LMG 20539]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAGTGG
CAGTGCTGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGAAAGCTGGCGGAAGTTGCTGGTGAATACCTGCGCAAAGGGTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTGGTTGTTCAAGGGTT
CAACGGTGTCATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAACAATCACAACAACAGTACAGTGCTCCTGCTCAACAGCAGCCT
AAAGCACCCCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATT
TTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.894

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455

Multiple sequence alignment