Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV24_RS12495 Genome accession   NZ_AP025497
Coordinates   2779176..2779823 (+) Length   215 a.a.
NCBI ID   WP_137025924.1    Uniprot ID   -
Organism   Vibrio kanaloae strain LMG 20539     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2774176..2784823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV24_RS12480 - 2774698..2776140 (-) 1443 WP_150878704.1 MSHA biogenesis protein MshI -
  OCV24_RS12485 csrD 2776143..2778158 (-) 2016 WP_046224489.1 RNase E specificity factor CsrD -
  OCV24_RS12490 ssb 2778334..2778897 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  OCV24_RS12495 qstR 2779176..2779823 (+) 648 WP_137025924.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV24_RS12500 galU 2779981..2780853 (+) 873 WP_150878706.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV24_RS12505 uvrA 2781003..2783834 (+) 2832 WP_150878708.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24947.11 Da        Isoelectric Point: 9.9849

>NTDB_id=92159 OCV24_RS12495 WP_137025924.1 2779176..2779823(+) (qstR) [Vibrio kanaloae strain LMG 20539]
MRKSRYARTLHFLCIDPSDTHLHIKAIEKHLSIPLYKMTTDDLMLVDRKQSNRILLVDYKAVPQLLAAFPNLYVIWKNNE
IILFNVPQPLPTSELLNYGVLKGLFYDSEKKIKIAKGLREVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92159 OCV24_RS12495 WP_137025924.1 2779176..2779823(+) (qstR) [Vibrio kanaloae strain LMG 20539]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGATCCCAGCGACACTCACCTACACATAAAAGCGAT
AGAAAAGCATTTGTCTATTCCTCTCTACAAAATGACAACGGACGATTTGATGCTGGTAGATAGGAAACAGAGCAACCGTA
TTCTACTCGTCGATTACAAAGCGGTTCCACAATTACTTGCTGCATTCCCTAACTTGTACGTTATATGGAAAAATAATGAG
ATCATTTTATTTAATGTTCCGCAGCCGCTTCCTACCTCGGAGCTCCTTAATTATGGCGTACTAAAAGGGTTATTTTATGA
TTCCGAGAAAAAAATCAAAATAGCAAAAGGGCTTCGAGAGGTCATTGATGGTGATAACTGGTTACCGAGAAAGGTAACAA
ACCAACTGCTGTTTTATTACCGCAACATGGTCAACACCAACACTACACCCACGAATGTCGATTTAACCATCCGAGAGATC
CAAGTTATTCGCTGTCTTCAATCAGGTTCATCAAACACTCAGATAGCCGATGATTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTCTATCAGATATTTCGCAAGTTAGCGGTTAAAAATAGAGTCCAAGCAATTGCTTGGGCAAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment