Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VOT21_RS23275 Genome accession   NZ_CP142097
Coordinates   4939028..4940551 (+) Length   507 a.a.
NCBI ID   WP_049212967.1    Uniprot ID   -
Organism   Serratia sarumanii strain K-M0252     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4934028..4945551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOT21_RS23250 (VOT21_23250) - 4934230..4935156 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  VOT21_RS23255 (VOT21_23255) ilvM 4935180..4935437 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  VOT21_RS23260 (VOT21_23260) ilvG 4935434..4937080 (-) 1647 WP_060425246.1 acetolactate synthase 2 catalytic subunit -
  VOT21_RS23265 (VOT21_23265) ilvL 4937223..4937321 (-) 99 WP_013814970.1 ilv operon leader peptide -
  VOT21_RS23270 (VOT21_23270) - 4937455..4938687 (-) 1233 WP_049234772.1 MFS transporter -
  VOT21_RS23275 (VOT21_23275) comM 4939028..4940551 (+) 1524 WP_049212967.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VOT21_RS23280 (VOT21_23280) - 4940579..4940917 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  VOT21_RS23285 (VOT21_23285) hdfR 4941037..4941864 (+) 828 WP_033649961.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54419.75 Da        Isoelectric Point: 8.2129

>NTDB_id=921518 VOT21_RS23275 WP_049212967.1 4939028..4940551(+) (comM) [Serratia sarumanii strain K-M0252]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHHIPTALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQKVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVLLARARQLERAGKVNALLSNREVERDCVLQSADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=921518 VOT21_RS23275 WP_049212967.1 4939028..4940551(+) (comM) [Serratia sarumanii strain K-M0252]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAATAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCTCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGATGCCGGGC
GGCAACTGATTCTCTCAACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGATATCATCGGCCAGGAGCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGGGCATAACC
TATTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGCCTCACGGGCCTACTGCCACCGCTCACGGAG
CCTGAGGCGCTGGAAAGTCTAGCGGTCGCCAGCTTGCAGCATCACATTCCCACTGCCCTACCATGGCGCCAGAGGCCGTT
TCGCGCACCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGCTGATCGCGGCAATGAACCC
CAGCCCGACGGGGCACTATCAGGGGTTGCACAATCGCGCCTCACCGCAGAAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTGCCGCCGGGAACACTCAGTCATCGGAAAACACAC
GGAGAAAGCAGCGAACAAGTGCGGAAAAGAGTGCTGCTGGCACGCGCCCGGCAACTTGAACGCGCCGGTAAAGTCAACGC
GCTGCTGAGCAACCGCGAAGTGGAACGGGATTGCGTTCTGCAGTCGGCAGACGCCGAGTTTTTGGAGGCGACATTAAACG
CGCTGGGGTTATCGGTTCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCACCTCAGCGAAGCACTGGGCTATCGCAGCATGGACCGCCTGCTGTTACAACTGCATCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

65.68

100

0.657
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.143

99.014

0.635
  comM Legionella pneumophila str. Paris

51.004

98.225

0.501
  comM Legionella pneumophila strain ERS1305867

51.004

98.225

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.205

100

0.456