Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VOT21_RS21720 Genome accession   NZ_CP142097
Coordinates   4591078..4591611 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia sarumanii strain K-M0252     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4586078..4596611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOT21_RS21690 (VOT21_21690) - 4586402..4587763 (-) 1362 WP_060427053.1 NCS2 family permease -
  VOT21_RS21695 (VOT21_21695) - 4588096..4588503 (-) 408 WP_033636186.1 VOC family protein -
  VOT21_RS21700 (VOT21_21700) - 4588551..4589219 (-) 669 WP_033649718.1 glutathione S-transferase family protein -
  VOT21_RS21705 (VOT21_21705) - 4589216..4589659 (-) 444 WP_033636188.1 lipocalin-like domain-containing protein -
  VOT21_RS21710 (VOT21_21710) bhsA 4589856..4590116 (+) 261 WP_033636189.1 multiple stress resistance protein BhsA -
  VOT21_RS21715 (VOT21_21715) - 4590266..4591015 (+) 750 WP_039569629.1 3-oxoacyl-ACP reductase family protein -
  VOT21_RS21720 (VOT21_21720) ssb 4591078..4591611 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VOT21_RS21725 (VOT21_21725) uvrA 4591889..4594717 (+) 2829 WP_060427051.1 excinuclease ABC subunit UvrA -
  VOT21_RS21730 (VOT21_21730) - 4594947..4595999 (+) 1053 WP_060427049.1 NAD(P)-dependent alcohol dehydrogenase -
  VOT21_RS21735 (VOT21_21735) maa 4596029..4596586 (-) 558 WP_039569636.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=921516 VOT21_RS21720 WP_033654707.1 4591078..4591611(-) (ssb) [Serratia sarumanii strain K-M0252]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=921516 VOT21_RS21720 WP_033654707.1 4591078..4591611(-) (ssb) [Serratia sarumanii strain K-M0252]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAACCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAAAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362