Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VOT20_RS23825 Genome accession   NZ_CP142092
Coordinates   5065905..5067428 (+) Length   507 a.a.
NCBI ID   WP_060439635.1    Uniprot ID   -
Organism   Serratia sarumanii strain K-M0260     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5060905..5072428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOT20_RS23800 (VOT20_23800) - 5061106..5062032 (-) 927 WP_033636413.1 branched-chain amino acid transaminase -
  VOT20_RS23805 (VOT20_23805) ilvM 5062056..5062313 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  VOT20_RS23810 (VOT20_23810) ilvG 5062310..5063956 (-) 1647 WP_060429273.1 acetolactate synthase 2 catalytic subunit -
  VOT20_RS23815 (VOT20_23815) ilvL 5064099..5064197 (-) 99 WP_013814970.1 ilv operon leader peptide -
  VOT20_RS23820 (VOT20_23820) - 5064331..5065563 (-) 1233 WP_060439637.1 MFS transporter -
  VOT20_RS23825 (VOT20_23825) comM 5065905..5067428 (+) 1524 WP_060439635.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VOT20_RS23830 (VOT20_23830) - 5067456..5067794 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  VOT20_RS23835 (VOT20_23835) hdfR 5067914..5068741 (+) 828 WP_033649961.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54373.68 Da        Isoelectric Point: 7.9146

>NTDB_id=921443 VOT20_RS23825 WP_060439635.1 5065905..5067428(+) (comM) [Serratia sarumanii strain K-M0260]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSHSHTARHL
LEVCAFLLGQGELPVAATPPAADTACDSADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVLLARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=921443 VOT20_RS23825 WP_060439635.1 5065905..5067428(+) (comM) [Serratia sarumanii strain K-M0260]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAATAACGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCCGGCTCACTGCGCGCGGTCAGGGGCGCGATCCCGGCGGCGCTGGCGGCGGCTGATGCCGGGC
GGCAACTGATTCTCTCAACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCGGCACCTG
TTGGAAGTCTGCGCCTTTCTGCTCGGCCAGGGCGAACTGCCGGTGGCGGCCACGCCTCCCGCTGCGGACACCGCCTGCGA
CAGCGCCGATCTGCGCGATATCATCGGCCAGGAGCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCGGGCATAACC
TATTGCTGATTGGGCCCCCGGGCACCGGTAAAACCATGCTGGCCAGCCGCCTCACGGGCCTACTGCCACCGCTCACGGAG
CCTGAGGCGCTGGAAAGTCTAGCGGTCGCCAGCTTGCAGCATCACATTCCCGCTGCCCTACCATGGCGCCAGAGGCCGTT
TCGCGCACCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGCGCCAACGCCAAGGTCTGTTTCCCCGCCAGAGTGCAGCTGATCGCGGCAATGAACCC
CAGCCCGACGGGGCACTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGAACACTCAGTCATCGGAAAACACAC
GGAGAAAGCAGCGAACAAGTGCGGAAAAGAGTGCTGCTGGCACGCGCCCGGCAACTTGAACGCGCCGGTAAAGTCAACGC
GCTGCTGAGCAACCGCGAAGTGGAACGGGATTGCGTTCTGCAGGCGGCAGACGCCGAGTTTTTGGAGGCGACATTAAACG
CGCTGGGGTTATCGGTTCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGCCACCTCAGCGAAGCACTGGGCTATCGCAGCATGGACCGCCTGCTGTTACAACTGCATCGTAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

65.878

100

0.659
  comM Vibrio cholerae strain A1552

65.339

99.014

0.647
  comM Vibrio campbellii strain DS40M4

64.143

99.014

0.635
  comM Legionella pneumophila str. Paris

50.803

98.225

0.499
  comM Legionella pneumophila strain ERS1305867

50.803

98.225

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.098

100

0.454