Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M3O59_RS19120 Genome accession   NZ_CP142084
Coordinates   4362315..4363835 (+) Length   506 a.a.
NCBI ID   WP_116906034.1    Uniprot ID   A0A3E1KIQ4
Organism   Xanthomonas nasturtii strain 10053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4357315..4368835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O59_RS19100 (M3O59_019070) - 4358301..4358855 (+) 555 Protein_3722 RIO1 family regulatory kinase/ATPase -
  M3O59_RS19105 (M3O59_019075) - 4359076..4361061 (-) 1986 WP_116906033.1 beta-N-acetylglucosaminidase domain-containing protein -
  M3O59_RS19110 (M3O59_019080) - 4361492..4361866 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  M3O59_RS19115 (M3O59_019085) ubiK 4362020..4362298 (+) 279 WP_064632685.1 ubiquinone biosynthesis accessory factor UbiK -
  M3O59_RS19120 (M3O59_019090) comM 4362315..4363835 (+) 1521 WP_116906034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M3O59_RS19125 (M3O59_019095) - 4364167..4364676 (+) 510 WP_147308505.1 lipocalin family protein -
  M3O59_RS19130 (M3O59_019100) - 4365011..4365187 (-) 177 WP_010374782.1 hypothetical protein -
  M3O59_RS19135 (M3O59_019105) - 4365571..4367130 (+) 1560 WP_116906036.1 EAL domain-containing protein -
  M3O59_RS19140 (M3O59_019110) - 4367197..4368318 (-) 1122 WP_116906037.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53981.74 Da        Isoelectric Point: 8.1019

>NTDB_id=921401 M3O59_RS19120 WP_116906034.1 4362315..4363835(+) (comM) [Xanthomonas nasturtii strain 10053]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRGLIVPLANGAEAAIAGHVEAFTARTL
LDVCAALNGSQRAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGAHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRVRVIAARQRQLTRSTLPNAQLDQADTDRHCRLQHDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDCA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=921401 M3O59_RS19120 WP_116906034.1 4362315..4363835(+) (comM) [Xanthomonas nasturtii strain 10053]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAGGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAAGCAGCAGTGCGCGAATCACGCGAACGCGTGCGTGCCGCGCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGACCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCGATCGCACTGGGCATCCTGGCCGCCAGCGGGCAGATCGACCGCCAGGCGCTGGCCGAGTACGAATTCCT
CGGCGAGCTGGCACTCACCGGCGAGCTGCGCGGTGTCGACGGCGTCCTGCCCGCCGCGCTGGCGGCCGCGCAGGCCGGGC
GAGGGCTGATCGTGCCGCTGGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCACGCACCCTG
CTGGATGTCTGCGCCGCACTCAACGGCAGCCAGAGGGCGCCCGCCGCCGAACTGGCGGTGCAGGCGCTCGGCGCGCGCGC
CCTGCCCGACATGGCCGATGTCCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGGGCCCATCACC
TGCTTCTGGTCGGCAGCCCCGGCTGCGGCAAGACCTTGCTGGCTTCGCGCTTGCCCGGCCTGTTGCCCGACGCCAGCGAA
GCCGAAGCCCTGGAAACGGCCGCGATCACCTCGATCAGCGGCCGCGGACTGGATCTGGCCCGATGGCGGCAACGGCCCTA
CCGCGCCCCGCATCACACTGCCAGCGCGGTTGCCCTGGTCGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAGTGGCAACGGCAGACCCTGGAAGTGCTGCGAGAGCCGCTGGAA
TCGGGCCTGGTCACGATCTCGCGCGCGGCGCGCAGCGTGGATTTCCCGGCACGTTTCCAGCTGGTCGCGGCCATGAACCC
CTGCCCATGCGGTTGGGCGGGCGATGGCAGCGGGCGGTGCCGCTGCAGCAGCGACAGTATCCGCCGCTATCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGGCTGCCACCGCAGGCGCTGCGCAGCGGCAAC
CTGGGCGAGGACAGCGCCAGCGTACGTGTTCGCGTGATCGCCGCACGGCAGCGACAACTGACGCGCAGCACCTTGCCCAA
TGCGCAACTGGATCAAGCCGACACCGACCGCCATTGCCGCCTGCAGCATGACGATCAGTTGCTGCTGGAGCGCGCGATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACTGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCCATCGGCTACCGCAAACTGGATCGCGCGCTGAGCGCCGCCAGCGCCGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E1KIQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.46