Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VQY67_RS11220 Genome accession   NZ_CP142033
Coordinates   2494413..2495906 (-) Length   497 a.a.
NCBI ID   WP_324834299.1    Uniprot ID   -
Organism   Pseudomonas saxonica strain NCCB:25029     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2496043..2497401 2494413..2495906 flank 137


Gene organization within MGE regions


Location: 2494413..2497401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VQY67_RS11220 (VQY67_11220) comM 2494413..2495906 (-) 1494 WP_324834299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VQY67_RS11225 (VQY67_11225) - 2496043..2497350 (-) 1308 WP_146427858.1 IS4 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53128.29 Da        Isoelectric Point: 8.2562

>NTDB_id=921209 VQY67_RS11220 WP_324834299.1 2494413..2495906(-) (comM) [Pseudomonas saxonica strain NCCB:25029]
MSLAIVYSRAQVGVEAPAVTVEVHLANGLPALTLVGLPETAVKESKDRVRSAILNSGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQMPAAALEQVECLGELALSGAIRPVQGVLPAALVARAAGRALVVPMANAEEASLASGLTVIAAEHL
LQVVAHFSARSVIEPYVASGLLHASKPYPDLSDVQGQLSAKRALLIAAAGGHNLLFTGPPGTGKTLLASRLPGLLPPLNE
QEALEVAAIQSVASHVPLSCWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARARDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTSLNPAQAS
NDTTANAAERVAAARERQLQRQGCANAFLDLKGVRTHCTLSAVDNVWLETACERMSLSLRAAHRLLKVARTLADLEQVKE
IERKHLAEALQYRPDSR

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=921209 VQY67_RS11220 WP_324834299.1 2494413..2495906(-) (comM) [Pseudomonas saxonica strain NCCB:25029]
ATGTCGCTGGCCATCGTTTACAGCCGCGCCCAAGTCGGTGTGGAGGCGCCCGCCGTCACGGTTGAGGTTCATCTGGCGAA
TGGTTTGCCAGCGCTGACACTGGTCGGGCTGCCCGAAACAGCGGTCAAGGAAAGCAAGGACAGGGTACGAAGCGCCATTC
TGAATTCGGGGTTTGATTTCCCCGCCCGACGCATCACCTTGAATCTGGCGCCCGCCGATTTACCCAAAGATGGCGGACGC
TTTGATCTGGCGATAGCGCTGGGCATATTGGCTGCCAGTGGGCAAATGCCCGCAGCGGCACTGGAACAAGTGGAGTGTCT
CGGTGAACTGGCGTTATCCGGCGCTATTCGCCCTGTGCAGGGCGTTCTTCCAGCCGCACTGGTGGCTCGTGCGGCGGGTC
GTGCTCTGGTTGTGCCGATGGCCAATGCAGAAGAAGCCAGCCTGGCTTCAGGTTTGACGGTCATTGCCGCTGAACATTTG
CTGCAAGTCGTGGCGCACTTTTCTGCCCGTTCGGTGATTGAACCCTATGTGGCGAGCGGCTTGTTGCACGCCAGCAAACC
TTATCCAGACCTCAGCGATGTACAAGGGCAACTCTCAGCCAAGCGTGCACTGTTGATCGCCGCAGCGGGCGGCCACAACT
TGCTGTTCACCGGCCCTCCCGGTACGGGCAAAACCCTGTTAGCCAGCCGCCTGCCCGGCTTGCTGCCGCCGCTGAACGAG
CAGGAAGCGCTGGAAGTGGCCGCCATTCAATCCGTTGCCAGCCATGTGCCGTTAAGCTGCTGGCCGCAACGCCCTTTTCG
TCAGCCGCACCATTCAGCCTCTGGCCCCGCATTGGTGGGGGGCGGCTCTAAACCGCAACCGGGCGAAATCACCTTGGCGC
ATCACGGCGTATTGTTTTTGGATGAACTGCCCGAGTTTGACCGCAAGGTTCTTGAGGTTTTAAGAGAACCGATGGAATCA
GGTTTTATCGTGATTGCCCGTGCCCGCGACCGCATGCGCTTTCCGGCTCGGTTTCAACTGGTCGCCGCCATGAACCCCTG
TCCGTGTGGCTATCTGGGTGAACCGACAGGACGCTGCCGCTGCACGCCGGAGCAAATCCAGCGTTACCGCAACAAACTGT
CCGGCCCCTTGCTCGACCGGATCGACCTGCACCTGACCGTGGCGCGCGAAACCACCTCGCTCAATCCTGCGCAGGCCTCA
AACGACACCACGGCCAATGCTGCCGAACGGGTAGCGGCTGCCCGTGAGCGGCAATTGCAGCGTCAGGGGTGCGCCAATGC
CTTTCTCGACTTGAAGGGTGTACGGACACACTGCACGCTCAGTGCTGTGGATAACGTTTGGCTGGAAACCGCGTGTGAGC
GCATGAGCTTATCGCTGCGCGCAGCCCATCGCTTATTGAAGGTCGCGCGAACATTGGCGGATCTGGAGCAAGTAAAAGAG
ATAGAGAGGAAGCATTTGGCGGAAGCGTTGCAGTATCGGCCGGACAGTCGGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.511

100

0.557
  comM Haemophilus influenzae Rd KW20

55.2

100

0.555
  comM Vibrio cholerae strain A1552

55.11

100

0.553
  comM Glaesserella parasuis strain SC1401

54.257

100

0.551
  comM Legionella pneumophila str. Paris

49.598

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.598

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.562

100

0.465