Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VOI46_RS00740 Genome accession   NZ_CP142030
Coordinates   152340..153848 (+) Length   502 a.a.
NCBI ID   WP_004588672.1    Uniprot ID   A0AAD0TZ76
Organism   Pseudoalteromonas sp. CuT4-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 147340..158848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI46_RS00700 (VOI46_00700) - 148004..148627 (+) 624 WP_004588667.1 dUTP diphosphatase -
  VOI46_RS00705 (VOI46_00705) yrfG 148636..149283 (-) 648 WP_004588668.1 GMP/IMP nucleotidase -
  VOI46_RS00710 (VOI46_00710) nudE 149346..149918 (+) 573 WP_029772216.1 ADP compounds hydrolase NudE -
  VOI46_RS00715 (VOI46_00715) cysQ 149911..150702 (+) 792 WP_004588670.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VOI46_RS00735 (VOI46_00735) - 151692..152306 (+) 615 WP_055255143.1 trimeric intracellular cation channel family protein -
  VOI46_RS00740 (VOI46_00740) comM 152340..153848 (+) 1509 WP_004588672.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VOI46_RS00745 (VOI46_00745) - 153954..154658 (-) 705 WP_004588673.1 response regulator transcription factor -
  VOI46_RS00750 (VOI46_00750) - 154838..157333 (-) 2496 WP_282337997.1 S9 family peptidase -
  VOI46_RS00755 (VOI46_00755) - 157418..158494 (+) 1077 WP_282337996.1 hemolysin family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54960.90 Da        Isoelectric Point: 6.9995

>NTDB_id=921182 VOI46_RS00740 WP_004588672.1 152340..153848(+) (comM) [Pseudoalteromonas sp. CuT4-3]
MSLARIYSRAQVGINAPEVIVEVHLGNGLPAFNIVGLPEASVKESKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQVVCPDIHKYEFYGELALNGEVRGVNAILPSVLAAKEQNRCCFLPFTNDSLASLVNGVKRKAVNSL
QEVWGDLLNQQPLPLNIEYPDCAQSPDFLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMATIMPTMS
DDEAISTAALYSIIGQSIDLNNWRQRPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGSVVISRAARQMEFPAQFQLIAALNPSPTGCHNDKRATPDQVMRYLSRVSGPFIDRIDLQIELPRLTSVELQSTEPEE
TSAQVRARVEAAYSAQLKRQGKVNARLNNKEMNIHCTLAPAELQFLARASEKLSLSPRSYHRVIKVARTISDLKGAEHIS
LEELKEALNYRAFERLLAQLTK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=921182 VOI46_RS00740 WP_004588672.1 152340..153848(+) (comM) [Pseudoalteromonas sp. CuT4-3]
ATGTCGCTAGCTCGCATTTACTCTCGTGCCCAAGTGGGTATAAACGCCCCCGAGGTTATTGTAGAAGTACACCTAGGTAA
TGGTTTACCGGCATTTAATATTGTTGGGCTGCCAGAGGCCTCAGTTAAAGAATCAAAAGACAGGGTGCGTAGCGCCCTAG
AAAACTCTCAATTTGGTTTTCCTGATCAACGTATTACCGTAAATTTAGCCCCTGCCGATTTACCTAAAGATGGCGGGCGT
TTCGACTTAGCCATTGCCGTAGGTATTTTAGTGGCCTCGGGGCAGGTAGTGTGTCCAGATATACATAAATATGAATTTTA
CGGTGAGCTTGCCCTTAATGGTGAAGTGCGGGGAGTTAATGCCATTTTGCCTTCTGTACTTGCTGCAAAAGAGCAAAACC
GTTGCTGCTTTTTACCTTTTACCAACGATAGCCTCGCAAGTTTGGTGAACGGCGTTAAGCGTAAAGCGGTTAACTCGTTA
CAAGAAGTATGGGGGGATTTATTAAATCAGCAGCCACTACCTTTAAATATTGAATACCCAGATTGCGCCCAGTCTCCCGA
CTTTTTACTCGATTTAAGTGATGTTAAAGGCCAACCCGGTGCTAAGCGAGTGCTAGAAATAGCCGCCGCTGGAGGCCATA
ACCTACTTTTTTTAGGTCCACCTGGTACGGGTAAATCTATGCTAGCGCAGCGTATGGCTACGATAATGCCAACCATGTCA
GACGATGAGGCAATATCAACGGCTGCACTGTATTCTATTATTGGCCAATCAATTGATTTAAATAATTGGCGCCAACGGCC
TTTTCGAAACCCACACCACACTTGCTCGGCAGTCGCTTTAGTTGGTGGCTCTTCAAACCCTAAACCGGGTGAAATTTCAC
TTGCGCATAACGGGGTGTTGTTTTTGGACGAGCTTCCGGAATTTGAACGTAAGGTACTTGATTCGCTGCGTGAACCCATG
GAAACCGGCTCGGTGGTTATTTCGCGGGCTGCAAGGCAAATGGAGTTTCCGGCGCAGTTTCAGCTTATAGCCGCACTAAA
CCCAAGCCCTACCGGGTGTCATAATGATAAGCGAGCAACACCTGACCAAGTGATGCGCTATTTATCGCGCGTATCAGGCC
CGTTTATCGATCGTATCGATTTACAAATAGAGCTACCGCGACTAACAAGTGTTGAACTACAAAGTACCGAGCCTGAAGAA
ACCAGCGCCCAAGTAAGAGCCCGAGTAGAGGCGGCCTACAGTGCACAGCTAAAGCGCCAAGGTAAAGTTAATGCACGATT
AAATAATAAAGAAATGAATATACATTGCACTTTAGCCCCGGCTGAGTTGCAGTTTTTAGCGCGCGCTAGCGAAAAGCTGT
CGTTATCGCCACGCTCGTACCATAGGGTCATTAAAGTGGCGCGTACTATTAGTGATTTAAAAGGTGCAGAGCATATTAGT
TTAGAAGAGCTAAAAGAGGCGCTAAACTATCGCGCTTTTGAGCGGTTACTAGCGCAGTTAACTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.151

100

0.564
  comM Haemophilus influenzae Rd KW20

54.617

100

0.554
  comM Glaesserella parasuis strain SC1401

53.937

100

0.546
  comM Vibrio campbellii strain DS40M4

54.167

100

0.544
  comM Legionella pneumophila str. Paris

50.101

99.004

0.496
  comM Legionella pneumophila strain ERS1305867

50.101

99.004

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.304

100

0.416