Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV56_RS15985 Genome accession   NZ_AP025492
Coordinates   3542876..3544399 (-) Length   507 a.a.
NCBI ID   WP_086712406.1    Uniprot ID   A0A5M9N3L4
Organism   Vibrio gigantis strain LMG 22741     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537876..3549399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS15960 - 3537888..3538151 (+) 264 WP_086712409.1 YihD family protein -
  OCV56_RS15965 ccoG 3538479..3539897 (+) 1419 WP_086712408.1 cytochrome c oxidase accessory protein CcoG -
  OCV56_RS15970 - 3539971..3540957 (+) 987 WP_017058781.1 serine/threonine protein kinase -
  OCV56_RS15975 - 3541013..3541612 (+) 600 WP_050642882.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV56_RS15980 - 3541845..3542801 (+) 957 WP_086712407.1 DUF2860 domain-containing protein -
  OCV56_RS15985 comM 3542876..3544399 (-) 1524 WP_086712406.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV56_RS15990 ilvG 3544872..3546518 (+) 1647 WP_086712405.1 acetolactate synthase 2 catalytic subunit -
  OCV56_RS15995 ilvM 3546520..3546804 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  OCV56_RS16000 - 3546817..3547785 (+) 969 WP_086712404.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55567.80 Da        Isoelectric Point: 7.8953

>NTDB_id=92117 OCV56_RS15985 WP_086712406.1 3542876..3544399(-) (comM) [Vibrio gigantis strain LMG 22741]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASEQLPTSKIAKHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADLCGQAQLGLYRTEQHQVDVSELRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLIGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92117 OCV56_RS15985 WP_086712406.1 3542876..3544399(-) (comM) [Vibrio gigantis strain LMG 22741]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTTGGTGTAGAGGCGCCAGAAGTGACGGTTGAGGTGCATATAAGCAA
CGGAATGCCCGGCTTTACGCTGGTGGGTCTGCCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TTAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTCAATCTCGCTCCAGCAGATTTGCCAAAAGAGGGCGGACGT
TTTGATTTGCCTATTGCGCTAGGAATCTTAGTCGCCTCCGAGCAGCTTCCCACATCCAAGATCGCGAAGCATGAATTCAT
CGGTGAGTTGGCGTTGTCAGGAGAGTTGCGCTCAGTAAAGGGCGTGTTACCCGCAACGTTAGCCGCCGATAGTGTCGAAC
GATGTTTGGTCGTCCCACACCACAACGGTGATCAGGCGGCGCTGGTGGGCAAGGGAGCTCACAAATCCGCACAAACCTTG
TTGGAGGTTTGTGCGGATTTGTGTGGGCAGGCTCAGCTTGGTCTGTATCGTACCGAGCAACATCAAGTTGATGTGTCTGA
GCTTCGCGACCTGCAAGACATCATCGGCCAACAGCAAGGCAAACGAGCACTAGAGATAGCAGCTGCGGGTAACCATAACC
TACTTTTTCTAGGCCCTCCCGGAACGGGCAAGACCATGTTGGCTTCTCGACTGCGTGATTTGTTACCTGAAATGAGTGAT
GACGAAGCGATGGAAACCGCTTCGGTGGCTTCGTTAACGCAACAAGAGATCAATCAATACAACTGGAAACAACGTCCTTT
TCGCGCTCCACATCATTCGAGTTCAATGGCAGCACTGGTAGGTGGGGGCTCAGTCCCTCGCCCCGGCGAGATCTCTTTGG
CGCACAATGGCTTATTGTTTCTTGATGAGATGCCCGAGTTTGAGCGCAAGGTGCTCGATTCATTGCGTGAGCCACTGGAG
TCGGGTGAAATCATTATCTCGCGGGTGGCGGGGAAAACTCGTTTCCCTGCGCGCTTTCAATTGATCGGTGCACTCAACCC
AAGTCCAACAGGTTACTACGAAGGTAATCAAGCACGCGCTAACCCGCAGATCATATTGCGCTACCTCAATCGGCTATCTG
GGCCGTTACTTGATCGGTTTGATATGTCATTGGAGATTCCATTGCTGCCTAAAGGAATGCTCGCCGAGGGTGGTGACCGC
GGTGAAACCACTCAGGTTGTAAAGCAAAGAGTTAAACAAGCTCGTCAGTTGATGCTATCTCGCAACCATAAATCGAATGC
ACTGTTAGGTAGTCGAGAAATTGAGAAGTATTGCCCACTGCGACGTGAAGATGCCGAGTTTCTGGAAACAGCGCTGCATA
GACTGGGTTTATCGATTCGTGCCTATCATCGAATCATCAAGGTCGCACGTACTATTGCTGATCTGGATGGTAACGAGCAG
ATAGAAAAGAAACACTTATCGGAAGCGCTTGGTTACCGCGCGATGGATAGATTATTGAAGCAACTTACGGCACAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9N3L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.826

100

0.838
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

63.281

100

0.639
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.7

99.803

0.416

Multiple sequence alignment