Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   U0O11_RS00355 Genome accession   NZ_CP142020
Coordinates   78691..80235 (+) Length   514 a.a.
NCBI ID   WP_324691024.1    Uniprot ID   -
Organism   Cobetia sp. D5 isolate Qingdao     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 73691..85235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0O11_RS00330 (U0O11_00330) glnK 74231..74569 (-) 339 WP_024951507.1 P-II family nitrogen regulator -
  U0O11_RS00335 (U0O11_00335) - 74719..75966 (-) 1248 WP_043331583.1 ammonium transporter -
  U0O11_RS00340 (U0O11_00340) - 75998..76336 (-) 339 WP_324691021.1 P-II family nitrogen regulator -
  U0O11_RS00345 (U0O11_00345) - 76774..77148 (+) 375 WP_192839057.1 accessory factor UbiK family protein -
  U0O11_RS00350 (U0O11_00350) - 77243..77521 (-) 279 WP_043331581.1 hypothetical protein -
  U0O11_RS00355 (U0O11_00355) comM 78691..80235 (+) 1545 WP_324691024.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  U0O11_RS00360 (U0O11_00360) - 80270..81355 (-) 1086 WP_324691026.1 DUF4105 domain-containing protein -
  U0O11_RS00365 (U0O11_00365) - 81380..82531 (-) 1152 WP_324691028.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  U0O11_RS00370 (U0O11_00370) - 82630..83157 (-) 528 WP_324691030.1 hypothetical protein -
  U0O11_RS00375 (U0O11_00375) - 83154..84092 (-) 939 WP_225348087.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54878.24 Da        Isoelectric Point: 7.4753

>NTDB_id=921094 U0O11_RS00355 WP_324691024.1 78691..80235(+) (comM) [Cobetia sp. D5 isolate Qingdao]
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLSIVGLPEAAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGR
FDLPIALGILVASGQIPEEAVAAMECLGELALDGSIRAVTGVLPAALCCRKAGRALVVPRGNADEAALAEELEVLAVGHL
LELVAHLLGRERLTPHVCSIIPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTMLASRLSGILPPLGE
GEALEVAAVRSVCGLPIMERWGQRPFRAPHHTASGVALVGGGSKPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLES
GRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPAQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATP
GEASAGVRERVLAARARQLARGGLNAHLDTHALEAACQLEDGERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIDQDGV
QRPQLMEAIGYRQLDRMMGRDPARPGAGAQQRSA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=921094 U0O11_RS00355 WP_324691024.1 78691..80235(+) (comM) [Cobetia sp. D5 isolate Qingdao]
ATGTCATTGGCAATGTTGCGCACGCGCGCGTCACTTGGTCTCGAGGCACCGGAAGTTCAGGTCGAGGTACACCTTTCCAA
CGGCTTGCCGGGGCTGTCCATCGTCGGCTTGCCGGAAGCGGCGGTGAAGGAGAGTCGCGAGCGGGTGCGCAGTGCGCTGC
TCAATGCCGGCTTCGAGTTTCCGGCGCGCCGTATCACCCTCAATCTGGCGCCAGCGGATCTCCCCAAGGAAGGTGGGCGC
TTCGATCTGCCCATTGCGCTGGGGATTCTGGTCGCCTCCGGGCAGATACCGGAAGAGGCTGTGGCAGCGATGGAGTGCCT
CGGCGAGCTGGCGCTGGATGGCAGCATCCGCGCCGTGACCGGCGTGCTGCCAGCCGCGCTCTGCTGTCGCAAGGCGGGGC
GGGCGCTGGTGGTGCCGCGCGGCAATGCCGACGAGGCGGCGCTCGCCGAGGAGTTGGAAGTACTGGCGGTGGGTCATCTA
CTGGAGCTGGTGGCTCACCTGCTGGGGCGCGAGCGCCTCACGCCACATGTGTGTTCGATCATTCCTCAGGCGCGCCTGCC
GGAGCCCGACCTGAGCGAGGTGCGTGGCCAGCATCAGGCACGCAGGGCATTGGAGATCGCCGCGGCCGGCGGCCACAACC
TGCTGTTCGCTGGTCCGCCGGGCACCGGCAAGACGATGCTGGCCAGTCGCCTGTCCGGCATCTTGCCGCCACTGGGCGAA
GGTGAGGCGCTGGAAGTCGCGGCGGTGCGCTCGGTATGTGGTCTGCCGATCATGGAGCGCTGGGGTCAGCGGCCTTTTCG
TGCCCCGCACCACACGGCCAGTGGGGTCGCGTTGGTGGGCGGTGGCTCCAAGCCGCGCCCGGGCGAGGTGTCGCTGGCGC
ATCATGGCGTGCTGTTTCTGGATGAGCTGGCGGAGTTCGACCGTGGCGTGCTGGAAGTGATGCGCGAGCCGCTGGAGAGT
GGCCGTATCCTGATCTCGCGCGCCAGCCATCAACGCCGTTTCCCGGCGCGCTTCCAGTTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTCGGCGACAGCCGCCGCAATTGCAGCTGCACCCCAGCGCAGATCCAGCGCTATCAGGCGCGTCTGT
CCGGCCCGTTGCTGGACCGCATCGACCTGCAGGTCGAGGTGCCGGGCCTGCCCGCCGAGGAGCTGACATCCGCCACCCCC
GGCGAGGCCTCGGCCGGCGTGCGCGAACGAGTGCTGGCCGCTCGCGCGCGTCAATTGGCACGCGGCGGCCTGAATGCTCA
TCTGGATACCCACGCGCTGGAAGCCGCCTGTCAGCTGGAAGACGGCGAGCGCCAGTGGCTGGCCGGTGTGCTGTCACGCC
TCAATCTCTCGGCGCGCGCCTATCACCGGGTGCTGCGGGTCGCGCTGACACTCAGTGATCTGATCGACCAGGACGGTGTG
CAGCGGCCGCAGCTGATGGAGGCCATCGGCTATCGCCAGCTGGACCGCATGATGGGCAGGGACCCGGCTCGCCCGGGGGC
AGGCGCCCAGCAGCGCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.09

97.471

0.537
  comM Vibrio campbellii strain DS40M4

54.781

97.665

0.535
  comM Glaesserella parasuis strain SC1401

53.543

98.833

0.529
  comM Haemophilus influenzae Rd KW20

52.849

99.027

0.523
  comM Legionella pneumophila str. Paris

51.186

98.444

0.504
  comM Legionella pneumophila strain ERS1305867

51.186

98.444

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.968

96.498

0.444