Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGAOKPDK_RS14580 Genome accession   NZ_CP142019
Coordinates   3093914..3095401 (+) Length   495 a.a.
NCBI ID   WP_324641780.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain EMB-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3088914..3100401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGAOKPDK_RS14555 (VOI31_RS14550) ribD 3089830..3090915 (-) 1086 WP_266128681.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  DGAOKPDK_RS14560 (VOI31_RS14555) nrdR 3090931..3091389 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  DGAOKPDK_RS14565 (VOI31_RS14560) - 3091548..3092945 (-) 1398 WP_196085738.1 ammonium transporter -
  DGAOKPDK_RS14570 (VOI31_RS14565) glnK 3093003..3093341 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  DGAOKPDK_RS14575 (VOI31_RS14570) - 3093621..3093848 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  DGAOKPDK_RS14580 (VOI31_RS14575) comM 3093914..3095401 (+) 1488 WP_324641780.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DGAOKPDK_RS14585 (VOI31_RS14580) - 3095416..3096850 (-) 1435 Protein_2855 PLP-dependent aminotransferase family protein -
  DGAOKPDK_RS14590 (VOI31_RS14585) - 3096962..3097738 (+) 777 WP_000845034.1 aldolase -
  DGAOKPDK_RS14595 (VOI31_RS14590) - 3097754..3098632 (+) 879 Protein_2857 dihydrodipicolinate synthase family protein -
  DGAOKPDK_RS14600 (VOI31_RS14595) - 3098674..3099486 (-) 813 WP_000975212.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54521.49 Da        Isoelectric Point: 7.5653

>NTDB_id=921072 DGAOKPDK_RS14580 WP_324641780.1 3093914..3095401(+) (comM) [Acinetobacter baumannii strain EMB-1]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAYAQPSAHSNEMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
RETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGILFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEIIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=921072 DGAOKPDK_RS14580 WP_324641780.1 3093914..3095401(+) (comM) [Acinetobacter baumannii strain EMB-1]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCTGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTCCCAACTAAGCGGCTAACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCCGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCAGTTAACCATTTA
AAAGAGGTATGCGAGCACTTTTTAGGCACACAAAAGCTAGCTTATGCGCAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGACCTTGCAGATGTTAAAGGTCAGCTACGGCCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACACTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCTTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CGAGAAACGCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGCTCACACCCCAAACCGGGTGAAATTACTTTATCTCATTTAG
GTATTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAGGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCTCCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCTCAAAGTGAGATCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Haemophilus influenzae Rd KW20

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.2

100

0.467