Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   VOI49_RS01930 Genome accession   NZ_CP142018
Coordinates   356329..358299 (+) Length   656 a.a.
NCBI ID   WP_115246683.1    Uniprot ID   A0A380JY97
Organism   Streptococcus dysgalactiae strain lu24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 351329..363299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS01915 - 352342..353523 (-) 1182 WP_226314034.1 D-alanyl-D-alanine carboxypeptidase family protein -
  VOI49_RS01920 - 353710..354615 (+) 906 Protein_323 DDE-type integrase/transposase/recombinase -
  VOI49_RS01925 pbp3 354761..355999 (-) 1239 WP_003049682.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  VOI49_RS01930 amiA 356329..358299 (+) 1971 WP_115246683.1 peptide ABC transporter substrate-binding protein Regulator
  VOI49_RS01935 amiC 358365..359867 (+) 1503 WP_003049686.1 ABC transporter permease Regulator
  VOI49_RS01940 amiD 359867..360793 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  VOI49_RS01945 amiE 360802..361872 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS01950 amiF 361865..362788 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72076.39 Da        Isoelectric Point: 5.0017

>NTDB_id=921002 VOI49_RS01930 WP_115246683.1 356329..358299(+) (amiA) [Streptococcus dysgalactiae strain lu24]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDAKSEALYVVEDSIKNLKAYQNGEVDFKEV
GIKALDEKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSKGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGLESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMQDGYIRHLSWNLNRTSFNNTKK
DAAQQEDGKKALNNKDFRQAIQFGFDRGSFQAQTVGEDAKTKALRNMLVPPTFVTIGKNDFGSEVEKEIAKLGDEWKNIN
LADAQDGLYNPEKAKVEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
SQGFYAKTPEQQDYDIIASWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDIVAAAGLDTYQTLLDEAAAITDDN
DARYTAYAKAQAYLLDDAVDIPVVSTGGSPRVSKVVPFSGAFAWAGAKGSLSYKGMKLQDKPVTTKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=921002 VOI49_RS01930 WP_115246683.1 356329..358299(+) (amiA) [Streptococcus dysgalactiae strain lu24]
ATGAAGAAAAGTAGATGGTTAGCAACTTTAGGTGTTGCTGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAATGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTAGATGGTCTTTTGGAAAATGACGAGTATGGTAACTTGGTA
CCATCGCTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGACTTTGTAACTGGTCTAAAACATGCGGTTGATGCTAAAT
CTGAAGCTTTATATGTTGTTGAAGATTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTTGATTTCAAAGAAGTC
GGTATTAAAGCGCTTGATGAAAAAACGGTTCAATACACTTTAAACAAACCTGAAAGTTACTGGAATTCGAAAACAACATA
TAGTGTACTTTTCCCAGTTAATGCGAAATTCTTGAAGTCAAAAGGTAAAGATTTTGGAACAACTGACCCATCATCAATCC
TTGTTAACGGAGCTTATTTCTTAAGTGCCTTCACTTCAAAATCATCCATGGAATTTCATAAAAATGAAAATTACTGGGAT
GCTAAGAATGTTGGACTAGAATCTGTTAAATTGACTTACTCAGACGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGATCCAACTTATAAATCAGCTAAGAAAAATTACGCTGATAACA
TTACTTACGGTATGCAAGACGGTTATATTCGTCACTTATCTTGGAATTTAAATCGTACATCATTTAACAATACTAAAAAA
GATGCAGCTCAACAGGAGGATGGCAAAAAAGCCCTTAATAACAAAGACTTCCGTCAAGCTATCCAATTTGGATTTGATCG
TGGTTCGTTCCAAGCTCAGACAGTCGGTGAAGATGCTAAAACAAAAGCTCTACGTAATATGCTAGTTCCACCAACATTTG
TGACTATTGGAAAAAATGACTTTGGTTCAGAAGTTGAAAAGGAAATTGCAAAACTTGGCGATGAATGGAAAAACATCAAC
TTAGCTGACGCTCAAGATGGTCTCTACAATCCAGAAAAGGCTAAAGTTGAGTTTGCTAAAGCCAAAGAAGCTCTGACAGC
TGAAGGAGTAACCTTCCCGGTTCAATTAGATTATCCTGTTGACCAAGCAAACGCAGCAACTGTTCAAGAGGCACAATCCT
TTAAACAATCTGTCGAAGCATCACTTGGGAAAGAAAACGTTGTTGTTAACGTTCTTGAAACAGAGACCTCTACTCATGAG
TCTCAAGGTTTCTACGCGAAAACACCAGAGCAGCAAGACTATGATATTATTGCATCGTGGTGGGGACCAGACTACCAAGA
TCCACGTACCTACCTTGATATTATGAGTCCAGTAGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAGGATATTGTAGCAGCTGCAGGTCTTGATACCTACCAAACTCTTCTTGATGAAGCAGCAGCAATTACAGACGATAAT
GATGCTCGTTACACAGCTTACGCGAAAGCTCAAGCTTACTTGTTAGATGATGCTGTTGATATTCCTGTTGTATCTACAGG
TGGTTCACCACGTGTATCTAAAGTTGTACCTTTTAGTGGTGCCTTTGCATGGGCGGGGGCTAAAGGTTCGCTCTCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGACAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JY97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.378

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.849

100

0.503
  amiA3 Streptococcus thermophilus LMD-9

49.245

100

0.497