Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   VOI49_RS01950 Genome accession   NZ_CP142018
Coordinates   361865..362788 (+) Length   307 a.a.
NCBI ID   WP_003057816.1    Uniprot ID   A0A9X8T611
Organism   Streptococcus dysgalactiae strain lu24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 356865..367788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS01935 amiC 358365..359867 (+) 1503 WP_003049686.1 ABC transporter permease Regulator
  VOI49_RS01940 amiD 359867..360793 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  VOI49_RS01945 amiE 360802..361872 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  VOI49_RS01950 amiF 361865..362788 (+) 924 WP_003057816.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34796.93 Da        Isoelectric Point: 6.4058

>NTDB_id=921006 VOI49_RS01950 WP_003057816.1 361865..362788(+) (amiF) [Streptococcus dysgalactiae strain lu24]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTSSGDILYDGKVINRRKSKS
ESNELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERKEKIKNMMAEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMNPEFVIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERQKELIVYNPEQHDYTEDKPTMVEIKPNHFVWANQAEVEKYKAEQ

Nucleotide


Download         Length: 924 bp        

>NTDB_id=921006 VOI49_RS01950 WP_003057816.1 361865..362788(+) (amiF) [Streptococcus dysgalactiae strain lu24]
ATGTCTGAGAAATTAGTCGAAGTTAAAGACCTAGAAATTTCCTTCGGAGAGGGAAAGAAAAAATTTGTTGCGGTTAAAAA
TGCCAATTTCTTTATCAAAAAAGGTGAAACTTTCTCTTTAGTTGGAGAATCTGGAAGCGGTAAAACAACAATTGGTCGTG
CTATTATTGGTTTGAATGATACCAGTTCTGGTGACATCCTTTATGATGGAAAAGTTATCAATCGAAGAAAGTCAAAATCA
GAATCAAATGAGCTCATTCGTAAGATTCAAATGATTTTCCAAGACCCTGCAGCTAGTCTGAATGAACGTGCAACTGTTGA
CTATATCATTTCAGAAGGTCTTTATAATTTTAATCTGTTCAAAACAGAAGAAGAACGTAAAGAAAAAATTAAGAACATGA
TGGCCGAAGTTGGTTTGTTATCAGAACATTTGACCCGCTATCCTCACGAATTTTCAGGAGGCCAACGTCAGCGGATTGGT
ATCGCGAGAGCCCTGGTGATGAATCCCGAATTTGTCATTGCTGATGAACCTATATCCGCTCTAGATGTTTCTGTTCGAGC
ACAGGTCTTGAATCTTCTTAAAAGAATGCAAGCAGAAAAAGGACTCACTTACCTTTTCATTGCCCACGACCTATCAGTTG
TTCGCTTCATTTCAGATCGTATTGCGGTTATCCATAAAGGAGTTATTGTGGAGGTTGCCGAAACAGAAGAATTATTTAAT
AATCCCATCCACCCTTACACAAAATCTCTTTTATCAGCTGTTCCTATTCCAGATCCAATATTGGAACGTCAAAAAGAGCT
TATTGTCTATAATCCAGAGCAACATGACTATACAGAAGATAAACCAACGATGGTTGAAATTAAGCCAAATCACTTTGTGT
GGGCTAACCAAGCAGAAGTTGAAAAGTATAAAGCAGAACAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.759

100

0.818
  amiF Streptococcus thermophilus LMD-9

81.433

100

0.814
  amiF Streptococcus salivarius strain HSISS4

81.433

100

0.814