Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VFH86_RS00100 Genome accession   NZ_CP142014
Coordinates   22653..24176 (+) Length   507 a.a.
NCBI ID   WP_000521788.1    Uniprot ID   Q9KVV6
Organism   Vibrio cholerae strain LK-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17653..29176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFH86_RS00085 (VFH86_00085) ilvE 19226..20164 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  VFH86_RS00090 (VFH86_00090) ilvM 20176..20460 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  VFH86_RS00095 (VFH86_00095) ilvG 20472..22118 (-) 1647 WP_345657874.1 acetolactate synthase 2 catalytic subunit -
  VFH86_RS00100 (VFH86_00100) comM 22653..24176 (+) 1524 WP_000521788.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VFH86_RS00105 (VFH86_00105) - 24266..25150 (+) 885 WP_000881901.1 acyltransferase -
  VFH86_RS00110 (VFH86_00110) - 25227..25829 (-) 603 WP_345657876.1 thiol:disulfide interchange protein DsbA/DsbL -
  VFH86_RS00115 (VFH86_00115) - 25860..26846 (-) 987 WP_345659010.1 serine/threonine protein kinase -
  VFH86_RS00120 (VFH86_00120) ccoG 26894..28318 (-) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  VFH86_RS00125 (VFH86_00125) - 28719..28985 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55077.16 Da        Isoelectric Point: 8.3602

>NTDB_id=920915 VFH86_RS00100 WP_000521788.1 22653..24176(+) (comM) [Vibrio cholerae strain LK-18]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=920915 VFH86_RS00100 WP_000521788.1 22653..24176(+) (comM) [Vibrio cholerae strain LK-18]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTGGTAGGATTGCCAGAAACTACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCCCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAAGGGGTTTTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCGATGGAAACAGCTTCGATTGCCTCTCTTACGCAGCAAGAAATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTAGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGGGAGATCGTGATTTCTCGCGCGCAGGGGAAAACCCGTTTTCCGGCGCGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCAATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAAAACGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KVV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

100

100

1
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

67.258

100

0.673
  comM Glaesserella parasuis strain SC1401

64.147

100

0.653
  comM Legionella pneumophila str. Paris

50.806

97.83

0.497
  comM Legionella pneumophila strain ERS1305867

50.806

97.83

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434