Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VA609_RS06875 Genome accession   NZ_CP142012
Coordinates   1526400..1527929 (-) Length   509 a.a.
NCBI ID   WP_324739106.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1521400..1532929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA609_RS06860 (VA609_06860) - 1521690..1522532 (+) 843 WP_324739103.1 divergent polysaccharide deacetylase family protein -
  VA609_RS06865 (VA609_06865) - 1522553..1523239 (+) 687 WP_324739104.1 hypothetical protein -
  VA609_RS06870 (VA609_06870) - 1523346..1525901 (-) 2556 WP_324739105.1 TonB-dependent receptor domain-containing protein -
  VA609_RS06875 (VA609_06875) comM 1526400..1527929 (-) 1530 WP_324739106.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VA609_RS06880 (VA609_06880) yihA 1528037..1528654 (-) 618 WP_005718080.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  VA609_RS06885 (VA609_06885) - 1528765..1529634 (+) 870 WP_014668443.1 VirK/YbjX family protein -
  VA609_RS06890 (VA609_06890) trmL 1529709..1530185 (-) 477 WP_005755093.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  VA609_RS06895 (VA609_06895) - 1530292..1531332 (-) 1041 WP_324739108.1 hypothetical protein -
  VA609_RS06900 (VA609_06900) - 1531355..1532875 (-) 1521 Protein_1335 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55944.37 Da        Isoelectric Point: 9.6874

>NTDB_id=920908 VA609_RS06875 WP_324739106.1 1526400..1527929(-) (comM) [Pasteurella multocida strain PM-2]
MSLAIVYSRASMGVQAPLVTIEVHFSNGKPQFNLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIDPQKLQQFEFVGELALTGDLRAVHGVIPAILAAQKAKRKLIIASQNANEASLVSQQDTYFAQHL
LEVVNFLNDHTTLPLASELPTQHDPALLATTQKDLTDIIGQSHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLP
EMNDQEAIETAAVTSLVHHELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQILRYLNRLSGPFLDRFDLSIEVPLLPKGALQQ
QTDRGESSAQVREKVLKVRDIQLARAGKINAYLTSKEIERDCKISDQDALFLENALAKLGLSVRAYHRILKVARTIADLN
NERQIQQCHLAEALGYRAMDRLLQKLSAI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=920908 VA609_RS06875 WP_324739106.1 1526400..1527929(-) (comM) [Pasteurella multocida strain PM-2]
ATGTCACTTGCAATTGTTTATAGTCGCGCCTCAATGGGCGTACAAGCCCCTTTAGTCACCATTGAGGTGCATTTCAGTAA
TGGTAAACCGCAATTCAACTTAGTCGGCTTACCCGAAAAAACCGTCAAAGAAGCACAAGATCGCGTACGCAGTGCCTTGC
TCAATGCTCAATTTAAATACCCCGCTAAACGGATCACGGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGCGGACGT
TTTGATTTACCGATCGCCATTGGTATGCTCGCCGCTTCTGGTCAAATTGATCCACAAAAGTTACAACAATTTGAATTTGT
GGGTGAGTTAGCGCTAACCGGTGATTTACGTGCAGTACATGGCGTCATCCCCGCGATCCTTGCTGCACAAAAAGCCAAGC
GGAAATTGATTATCGCCAGTCAAAATGCCAATGAAGCCTCGTTAGTTTCCCAGCAAGACACCTATTTTGCGCAACATTTA
TTAGAAGTCGTCAATTTCCTCAATGATCATACCACGTTACCTTTAGCCTCAGAACTGCCCACACAACATGATCCAGCCCT
TTTAGCAACAACACAAAAAGATTTAACCGATATTATCGGACAATCCCATGCTAAACGCGCCTTAACTATTGCTGCCGCAG
GACAACATAATCTGCTTTTTTTGGGACCGCCCGGTACAGGAAAGACCATGCTCGCCAGCCGATTAACTACCTTGTTACCG
GAAATGAACGATCAAGAAGCCATTGAAACCGCCGCAGTGACAAGCCTTGTTCATCATGAATTGAATTTTCATAATTGGAA
ACAACGCCCATTTCGTGCCCCTCATCACAGCGCTTCAACACCGGCTTTAGTAGGGGGCGGCACCATACCCAAACCCGGTG
AAATTTCGCTCGCACACAATGGGGTGTTATTTCTCGATGAGTTACCAGAATTTGAACGTAAAGTATTAGATGCCTTACGT
CAACCTTTGGAAAGTGGTGAAATTATCATTTCGCGTGCCAATGCAAAAATTCAATTTCCTGCTCGTTTTCAATTAATTGC
CGCCATGAATCCTAGCCCAACAGGACATTATCAAGGTACTCACAATCGCACCTCACCACAACAAATCTTGCGTTATCTCA
ATCGCTTATCCGGTCCGTTTTTAGATCGCTTTGATTTGTCAATCGAAGTCCCTTTACTACCCAAAGGCGCGTTACAACAG
CAAACAGATCGGGGCGAAAGTAGCGCACAAGTGAGAGAAAAAGTATTAAAAGTACGCGACATACAACTGGCGCGTGCGGG
GAAAATTAATGCTTATTTGACCAGTAAAGAAATTGAGCGAGACTGTAAGATCAGTGATCAAGATGCGTTATTTTTAGAAA
ATGCCTTAGCTAAATTGGGGTTATCCGTGCGCGCCTATCATCGTATTTTAAAAGTAGCACGCACCATTGCAGACTTAAAT
AATGAACGCCAAATTCAACAATGCCACCTCGCCGAAGCACTGGGTTATCGGGCGATGGATAGGCTGTTACAGAAGTTATC
TGCAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.813

99.607

0.845
  comM Glaesserella parasuis strain SC1401

77.909

99.607

0.776
  comM Vibrio cholerae strain A1552

66.208

100

0.662
  comM Vibrio campbellii strain DS40M4

65.116

100

0.66
  comM Legionella pneumophila str. Paris

51.8

98.232

0.509
  comM Legionella pneumophila strain ERS1305867

51.8

98.232

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.524

100

0.47