Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VA609_RS04355 Genome accession   NZ_CP142012
Coordinates   980249..981460 (-) Length   403 a.a.
NCBI ID   WP_324739548.1    Uniprot ID   -
Organism   Pasteurella multocida strain PM-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975249..986460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA609_RS04325 (VA609_04325) raiA 976025..976342 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  VA609_RS04330 (VA609_04330) - 976587..977960 (-) 1374 WP_005722571.1 alanine/glycine:cation symporter family protein -
  VA609_RS04335 (VA609_04335) - 978409..978678 (-) 270 WP_324739503.1 GNAT family N-acetyltransferase -
  VA609_RS04340 (VA609_04340) yacG 978678..978881 (-) 204 WP_005719879.1 DNA gyrase inhibitor YacG -
  VA609_RS04345 (VA609_04345) coaE 978892..979512 (-) 621 WP_005753357.1 dephospho-CoA kinase -
  VA609_RS04350 (VA609_04350) - 979527..980249 (-) 723 WP_064968698.1 prepilin peptidase -
  VA609_RS04355 (VA609_04355) pilC 980249..981460 (-) 1212 WP_324739548.1 type II secretion system F family protein Machinery gene
  VA609_RS04360 (VA609_04360) pilB 981460..982845 (-) 1386 WP_046333442.1 GspE/PulE family protein Machinery gene
  VA609_RS04365 (VA609_04365) pilA 982845..983279 (-) 435 WP_005741096.1 prepilin peptidase-dependent pilin Machinery gene
  VA609_RS04370 (VA609_04370) ampD 983439..984005 (+) 567 WP_324739504.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VA609_RS04375 (VA609_04375) rppH 984592..985059 (+) 468 Protein_841 RNA pyrophosphohydrolase -
  VA609_RS04380 (VA609_04380) - 985191..985985 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46099.03 Da        Isoelectric Point: 9.6712

>NTDB_id=920895 VA609_RS04355 WP_324739548.1 980249..981460(-) (pilC) [Pasteurella multocida strain PM-2]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLGLRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLMLNARQRVGLY
RLKNCLLHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIAQGYT
FSEVIDSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=920895 VA609_RS04355 WP_324739548.1 980249..981460(-) (pilC) [Pasteurella multocida strain PM-2]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTACATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACCGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCGCTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGGGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTTATTTTTTTGATGTTAAATGCGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCCTTCCAATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGAGCTTACCGAGATGCGACTGGCTGAAGAAGTACAGTTAATGTTAAAGGGGATTGCTCAAGGTTATACG
TTTTCTGAGGTTATCGACTCTAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

47.901

100

0.481
  pilC Haemophilus influenzae 86-028NP

47.654

100

0.479
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395