Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M3O54_RS19215 Genome accession   NZ_CP142004
Coordinates   4405708..4407228 (+) Length   506 a.a.
NCBI ID   WP_064632688.1    Uniprot ID   -
Organism   Xanthomonas nasturtii strain 8853     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4400708..4412228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O54_RS19195 (M3O54_019155) - 4401736..4402290 (+) 555 Protein_3739 RIO1 family regulatory kinase/ATPase -
  M3O54_RS19200 (M3O54_019160) - 4402511..4404496 (-) 1986 WP_064632683.1 beta-N-acetylglucosaminidase domain-containing protein -
  M3O54_RS19205 (M3O54_019165) - 4404885..4405259 (-) 375 WP_199680230.1 P-II family nitrogen regulator -
  M3O54_RS19210 (M3O54_019170) - 4405413..4405691 (+) 279 WP_064632685.1 accessory factor UbiK family protein -
  M3O54_RS19215 (M3O54_019175) comM 4405708..4407228 (+) 1521 WP_064632688.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M3O54_RS19220 (M3O54_019180) - 4407560..4408069 (+) 510 WP_064632690.1 lipocalin family protein -
  M3O54_RS19225 (M3O54_019185) - 4408404..4408580 (-) 177 WP_010374782.1 hypothetical protein -
  M3O54_RS19230 (M3O54_019190) - 4408964..4410523 (+) 1560 WP_064632693.1 EAL domain-containing protein -
  M3O54_RS19235 (M3O54_019195) - 4410590..4411711 (-) 1122 WP_064632695.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53965.68 Da        Isoelectric Point: 8.1567

>NTDB_id=920853 M3O54_RS19215 WP_064632688.1 4405708..4407228(+) (comM) [Xanthomonas nasturtii strain 8853]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRGLIVPLANGAEAAIAGHVEAFTARTL
LDVCAALNGSQRAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGAHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRVRVIAARQRQLTRSTLPNAQLDQADTDRHCRLQHDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=920853 M3O54_RS19215 WP_064632688.1 4405708..4407228(+) (comM) [Xanthomonas nasturtii strain 8853]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAGGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAAGCAGCAGTGCGCGAATCACGCGAACGCGTGCGTGCCGCGCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGACCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCGATCGCACTGGGCATCCTGGCCGCCAGCGGGCAGATCGACCGCCAGGCGCTGGCCGAGTACGAATTCCT
CGGCGAGCTGGCACTCACCGGCGAGCTGCGCGGTGTCGACGGCGTCCTGCCCGCCGCGCTGGCGGCCGCGCAGGCCGGGC
GAGGGCTGATCGTGCCGCTGGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACTGCACGCACCCTG
CTGGATGTCTGCGCCGCACTCAACGGCAGCCAGAGGGCGCCCGCCGCCGAACTGGCGGTGCAGGCACTCGGCGCGCGCGC
CCTGCCCGACATGGCCGATGTCCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGGGCCCATCACC
TGCTTCTGGTCGGCAGCCCCGGCTGCGGCAAGACCTTGCTGGCTTCGCGCTTGCCCGGCCTGTTGCCCGACGCCAGCGAA
GCCGAAGCCCTGGAAACGGCCGCGATCACCTCGATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAACGGCCCTA
CCGCGCCCCGCATCACACTGCCAGCGCGGTTGCCCTGGTCGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAGTGGCAACGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCGGGCCTGGTCACGATCTCGCGCGCGGCGCGCAGCGTGGATTTCCCGGCACGTTTCCAGCTGGTCGCGGCCATGAACCC
CTGCCCATGCGGTTGGGCGGGCGATGGCAGCGGGCGGTGCCGCTGCAGCAGCGACAGTATCCGCCGCTATCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGGCTGCCACCGCAGGCGCTGCGCAGCGGCAAC
CTGGGCGAGGACAGCGCCAGCGTACGTGTTCGCGTGATCGCCGCACGGCAGCGACAACTGACGCGCAGCACCTTGCCCAA
TGCGCAACTGGATCAAGCCGACACCGACCGCCATTGCCGCCTGCAGCATGACGATCAGTTGCTGCTGGAGCGCGCGATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCA
GACATCGCCACGCGCCATCTCACCGAAGCCATCGGCTACCGCAAACTGGATCGCGCGCTGAGCGCCGCCAGCGCCGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.46