Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV56_RS01650 Genome accession   NZ_AP025492
Coordinates   351011..351568 (+) Length   185 a.a.
NCBI ID   WP_017061342.1    Uniprot ID   -
Organism   Vibrio gigantis strain LMG 22741     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 346011..356568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS01635 uvrA 346073..348904 (-) 2832 WP_086713486.1 excinuclease ABC subunit UvrA -
  OCV56_RS01640 galU 349056..349928 (-) 873 WP_086713485.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV56_RS01645 qstR 350085..350732 (-) 648 WP_086713492.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV56_RS01650 ssb 351011..351568 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  OCV56_RS01655 csrD 351730..353745 (+) 2016 WP_086713484.1 RNase E specificity factor CsrD -
  OCV56_RS01660 - 353748..355190 (+) 1443 WP_086713483.1 MSHA biogenesis protein MshI -
  OCV56_RS01665 pilO 355190..355837 (+) 648 WP_086713482.1 type 4a pilus biogenesis protein PilO -
  OCV56_RS01670 - 355830..356159 (+) 330 WP_086713481.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.52 Da        Isoelectric Point: 5.2358

>NTDB_id=92081 OCV56_RS01650 WP_017061342.1 351011..351568(+) (ssb) [Vibrio gigantis strain LMG 22741]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=92081 OCV56_RS01650 WP_017061342.1 351011..351568(+) (ssb) [Vibrio gigantis strain LMG 22741]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
TGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCGCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTGGTTGTTCAAGGCTT
CAACGGTGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTGGTTGGGGCCAACCACAGCAGCCACAACAACAGCAGCAACAATACAGTGCTCCAGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.447

100

0.584
  ssb Neisseria meningitidis MC58

47.568

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.568

100

0.476

Multiple sequence alignment