Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV56_RS01645 Genome accession   NZ_AP025492
Coordinates   350085..350732 (-) Length   215 a.a.
NCBI ID   WP_086713492.1    Uniprot ID   A0A5M9N2Q6
Organism   Vibrio gigantis strain LMG 22741     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 345085..355732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS01635 uvrA 346073..348904 (-) 2832 WP_086713486.1 excinuclease ABC subunit UvrA -
  OCV56_RS01640 galU 349056..349928 (-) 873 WP_086713485.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV56_RS01645 qstR 350085..350732 (-) 648 WP_086713492.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV56_RS01650 ssb 351011..351568 (+) 558 WP_017061342.1 single-stranded DNA-binding protein Machinery gene
  OCV56_RS01655 csrD 351730..353745 (+) 2016 WP_086713484.1 RNase E specificity factor CsrD -
  OCV56_RS01660 - 353748..355190 (+) 1443 WP_086713483.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25109.24 Da        Isoelectric Point: 9.2438

>NTDB_id=92080 OCV56_RS01645 WP_086713492.1 350085..350732(-) (qstR) [Vibrio gigantis strain LMG 22741]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYKEVPQLLVICPNLAVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYSTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92080 OCV56_RS01645 WP_086713492.1 350085..350732(-) (qstR) [Vibrio gigantis strain LMG 22741]
ATGAGAAAATCACGATACGCTCGCACTTTGCATTTTCTGTGCATCGACCCAAACGACACCTATCTACATGTAAAAGAGAT
AGAAAAGCATTTATCTATTATTCTCTACAAAATGACGCCCGATGAATTAATGCTAGTTGATAGAAAGCAGAGCAATCGGA
TCTTGCTCGTCGATTATAAAGAGGTGCCACAACTACTGGTTATTTGTCCTAACCTGGCTGTTATGTGGAAAAACCATGAG
ATCATCTTATTCAATGTCCCTCAGCAACTTCCAACCTCGGAACTTCTTACCTATGGTGTACTTAAAGGGCTATTTTACAG
CACAGAGCAAAAAGATAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCGAGAAAGGTAACCA
ATCAACTGCTGTTTTATTATCGTAATATGGTCAATACCAACACAACACCTACTAATGTTGATCTCACCATTCGCGAGATC
CAGGTTATTCGTTGCCTTCAGTCAGGGTCATCAAACACGCAAATAGCCGATGACTTATTTATTAGTGAGTTCACGGTCAA
ATCCCACCTTTATCAGATATTCCGTAAGTTAGCGGTCAAAAATAGAGTTCAAGCCATTGCGTGGGCAAACCAGAATCTGC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9N2Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.953

100

0.54
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment