Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VK748_RS11395 Genome accession   NZ_CP141948
Coordinates   2423076..2424563 (-) Length   495 a.a.
NCBI ID   WP_276213669.1    Uniprot ID   A0AAW6NZ43
Organism   Pseudomonas citronellolis strain G5.41a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2418076..2429563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK748_RS11360 (VK748_11360) - 2418540..2418911 (-) 372 WP_069863017.1 hypothetical protein -
  VK748_RS11365 (VK748_11365) - 2418890..2419117 (-) 228 WP_134163353.1 hypothetical protein -
  VK748_RS11370 (VK748_11370) - 2419243..2419587 (-) 345 WP_237770769.1 hypothetical protein -
  VK748_RS11375 (VK748_11375) - 2419642..2419821 (-) 180 Protein_2237 Com family DNA-binding transcriptional regulator -
  VK748_RS11380 (VK748_11380) - 2420072..2420881 (-) 810 WP_324710980.1 TlpA disulfide reductase family protein -
  VK748_RS11385 (VK748_11385) - 2421216..2422667 (-) 1452 WP_324710981.1 PLP-dependent aminotransferase family protein -
  VK748_RS11390 (VK748_11390) - 2422842..2423072 (+) 231 WP_276213670.1 DUF1127 domain-containing protein -
  VK748_RS11395 (VK748_11395) comM 2423076..2424563 (-) 1488 WP_276213669.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VK748_RS11400 (VK748_11400) - 2424749..2425015 (-) 267 WP_009614069.1 accessory factor UbiK family protein -
  VK748_RS11405 (VK748_11405) - 2425108..2427138 (-) 2031 WP_276213668.1 acyltransferase family protein -
  VK748_RS11410 (VK748_11410) glnK 2427682..2428020 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  VK748_RS11415 (VK748_11415) - 2428056..2429390 (+) 1335 WP_009614064.1 ammonium transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52222.92 Da        Isoelectric Point: 7.9974

>NTDB_id=920549 VK748_RS11395 WP_276213669.1 2423076..2424563(-) (comM) [Pseudomonas citronellolis strain G5.41a]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRTLVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALDDQDQAWLETAGERLDLSLRALHRILKVARTLADLEGAKRI
ARSHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=920549 VK748_RS11395 WP_276213669.1 2423076..2424563(-) (comM) [Pseudomonas citronellolis strain G5.41a]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATCC
TCAACTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCTGCCCTGGCGGCGCGCGCCGCCGGCC
GCACCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCCAGCCTGGCCAGCGGCCTGACCGTCTACGCCGTCGGCCACCTG
CTGGAACTGGCCGCGCACCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGTTGCTGAGCGGTCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGTTGCTGCCGCCGCTGAGCGAA
GACGAGGCGCTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCTGCCGCGCTGGTGGGCGGCGGCAGCCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTATTTCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTCCTGGAAGTCCTCCGCGAGCCCCTGGAAGGG
GGAGAAATCGTGATCGCCCGGGCCAACGGCCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACTCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTTGGCCGCGAGACCACGCGTCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAGCGGCAACTGGCGCGGCAGGGTTGCGCGAACGCCGT
TCTCGACCTCAAGTCGATGCACCATAATTGTGCACTGGACGATCAGGACCAGGCCTGGCTGGAAACCGCCGGCGAGCGCC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAAGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCAAACGCATC
GCCCGCTCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.855

100

0.57
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.01

100

0.566
  comM Glaesserella parasuis strain SC1401

53.557

100

0.547
  comM Legionella pneumophila str. Paris

50.099

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.099

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.473