Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VK847_RS23000 Genome accession   NZ_CP141899
Coordinates   5021100..5022593 (+) Length   497 a.a.
NCBI ID   WP_324708347.1    Uniprot ID   -
Organism   Pseudomonas fragi strain LKYC.ZH     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5016100..5027593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK847_RS22965 (VK847_22965) sutA 5016661..5016987 (-) 327 WP_016782663.1 transcriptional regulator SutA -
  VK847_RS22970 (VK847_22970) - 5017468..5018805 (-) 1338 WP_083369719.1 ammonium transporter -
  VK847_RS22975 (VK847_22975) glnK 5018839..5019177 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  VK847_RS22980 (VK847_22980) - 5019595..5019855 (+) 261 WP_016782665.1 accessory factor UbiK family protein -
  VK847_RS22985 (VK847_22985) - 5019902..5020330 (+) 429 WP_324708346.1 VOC family protein -
  VK847_RS22990 (VK847_22990) - 5020332..5020637 (-) 306 WP_106115655.1 HigA family addiction module antitoxin -
  VK847_RS22995 (VK847_22995) - 5020645..5020923 (-) 279 WP_029611627.1 type II toxin-antitoxin system RelE/ParE family toxin -
  VK847_RS23000 (VK847_23000) comM 5021100..5022593 (+) 1494 WP_324708347.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VK847_RS23005 (VK847_23005) - 5022603..5023523 (-) 921 WP_106115657.1 LysR substrate-binding domain-containing protein -
  VK847_RS23010 (VK847_23010) - 5023676..5025076 (+) 1401 WP_095039778.1 NorM family multidrug efflux MATE transporter -
  VK847_RS23015 (VK847_23015) - 5025203..5026870 (-) 1668 WP_169905958.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53021.34 Da        Isoelectric Point: 8.2054

>NTDB_id=920448 VK847_RS23000 WP_324708347.1 5021100..5022593(+) (comM) [Pseudomonas fragi strain LKYC.ZH]
MALAIVYSRAQVGVEAPAVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIINSTLDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPAVALEQVECLGELALSGAIRPVQGILPAALAARAAGRALVVPLANAEEACLACGLTVIAAEHL
LQVVAHFAGREVIAPYSPSGLLHLSKPYPDLSDVQGQLSAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLNE
HEALEVAAIQSVASHVPLNSWPQRPFRQPHHSASGPALVGGGSKPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GFIVIARAKDRMRFPARFQLVAAMNPCPCGYLGEPTGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTTLNPPLAS
DDTTAKAASLVAAARERQLQRQGCANAFLDLPGVRAQCRLSDGDNRWLEAACERMTLSLRAAHRLLKVARTLADLEQVQH
IEHKHLAEALQYRPLSG

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=920448 VK847_RS23000 WP_324708347.1 5021100..5022593(+) (comM) [Pseudomonas fragi strain LKYC.ZH]
ATGGCTCTGGCGATTGTTTACAGCCGCGCCCAGGTGGGCGTCGAGGCGCCTGCGGTGACGGTGGAGGCGCATCTGGCCAA
TGGGTTGCCGGCGTTGACGCTGGTCGGTTTGCCTGAAACCGCAGTCAAGGAAAGTAAAGATCGAGTACGCAGTGCAATCA
TCAATTCCACCCTGGATTTCCCGGCCCGGCGGATCACCCTTAATCTCGCTCCCGCTGACCTGCCCAAGGACGGCGGGCGC
TTTGATCTGGCCATTGCCCTGGGCATTCTGGCGGCCAGCGGGCAACTGCCGGCAGTGGCGCTGGAGCAAGTGGAGTGTTT
GGGCGAACTGGCGCTATCGGGGGCAATCAGGCCGGTGCAGGGCATATTGCCGGCCGCCCTGGCAGCTCGCGCCGCAGGTC
GGGCGCTGGTGGTGCCGCTGGCCAATGCCGAGGAAGCCTGCCTGGCCTGCGGGCTGACGGTCATCGCGGCCGAGCACTTG
CTGCAGGTGGTGGCCCATTTCGCAGGCCGGGAAGTGATTGCGCCCTATAGCCCCAGCGGCTTGCTGCATCTAAGCAAGCC
CTATCCCGACCTGAGCGATGTCCAGGGCCAGCTTTCGGCCAAGCGGGCGTTGCTGGTGGCCGCAGCCGGCAGTCACAACC
TGCTGTTTACCGGGCCGCCAGGCACAGGCAAAACCTTGCTGGCCAGCCGCCTGCCTGGCTTGTTGCCCCCCCTCAATGAA
CACGAGGCGCTGGAAGTGGCCGCCATTCAGTCGGTGGCCAGCCATGTGCCATTGAACAGCTGGCCTCAGCGACCGTTTCG
CCAACCCCATCATTCGGCCTCCGGCCCCGCGCTGGTGGGCGGCGGTTCCAAACCCCGGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGTTGTTTCTTGATGAACTCCCCGAGTTTGATCGCAAGGTGCTGGAAGTCTTGCGAGAACCCATGGAAAGC
GGCTTTATTGTGATTGCCCGGGCGAAGGATCGCATGCGTTTTCCGGCGCGTTTCCAGCTGGTTGCGGCCATGAACCCCTG
CCCTTGTGGCTATCTCGGCGAACCCACAGGGCGCTGTCGCTGCACACCGGAGCAGATTCAGCGCTATCGCAACAAACTGT
CTGGCCCATTGCTCGATCGCATTGACCTGCACCTGACCGTGGCCCGCGAAACCACCACCCTCAACCCGCCACTGGCCTCA
GATGACACCACGGCCAAGGCGGCTTCGTTGGTAGCTGCGGCGCGAGAGCGGCAGCTGCAACGCCAGGGCTGTGCCAATGC
CTTTCTCGACCTGCCGGGGGTGCGTGCCCAATGCCGCTTGAGTGATGGGGATAACCGCTGGCTGGAGGCTGCTTGCGAGC
GCATGACCCTGTCACTGCGGGCGGCACATCGATTGTTGAAAGTGGCAAGAACCCTGGCAGACCTTGAACAGGTACAACAC
ATAGAGCACAAACATCTGGCAGAGGCGTTGCAGTATCGGCCGCTCAGTGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.221

100

0.553
  comM Vibrio cholerae strain A1552

54.93

100

0.549
  comM Haemophilus influenzae Rd KW20

53.984

100

0.545
  comM Glaesserella parasuis strain SC1401

52.976

100

0.537
  comM Legionella pneumophila str. Paris

48.992

99.799

0.489
  comM Legionella pneumophila strain ERS1305867

48.992

99.799

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.423

100

0.457