Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VK758_RS13130 Genome accession   NZ_CP141897
Coordinates   2724878..2725408 (-) Length   176 a.a.
NCBI ID   WP_126346020.1    Uniprot ID   -
Organism   Enterobacter bugandensis strain Eltt.P1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2719878..2730408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK758_RS13105 (VK758_13105) - 2720528..2721199 (-) 672 WP_049137624.1 glutathione S-transferase family protein -
  VK758_RS13110 (VK758_13110) soxR 2721487..2721945 (-) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  VK758_RS13115 (VK758_13115) soxS 2722044..2722370 (+) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  VK758_RS13120 (VK758_13120) - 2722377..2723942 (-) 1566 WP_324663337.1 EAL domain-containing protein -
  VK758_RS13125 (VK758_13125) - 2724536..2724817 (+) 282 WP_028015176.1 YjcB family protein -
  VK758_RS13130 (VK758_13130) ssb 2724878..2725408 (-) 531 WP_126346020.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VK758_RS13135 (VK758_13135) uvrA 2725660..2728482 (+) 2823 WP_041911534.1 excinuclease ABC subunit UvrA -
  VK758_RS13140 (VK758_13140) - 2728486..2728839 (-) 354 WP_028015174.1 MmcQ/YjbR family DNA-binding protein -
  VK758_RS13145 (VK758_13145) - 2728842..2729258 (-) 417 WP_041911536.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VK758_RS13150 (VK758_13150) aphA 2729371..2730084 (-) 714 WP_047366859.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18922.92 Da        Isoelectric Point: 5.2456

>NTDB_id=920408 VK758_RS13130 WP_126346020.1 2724878..2725408(-) (ssb) [Enterobacter bugandensis strain Eltt.P1]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=920408 VK758_RS13130 WP_126346020.1 2724878..2725408(-) (ssb) [Enterobacter bugandensis strain Eltt.P1]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTAGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCAGTCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.067

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.067

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.375