Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU78_RS01690 Genome accession   NZ_AP025490
Coordinates   382987..383544 (+) Length   185 a.a.
NCBI ID   WP_137374389.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 377987..388544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS01675 uvrA 378118..380946 (-) 2829 WP_137374386.1 excinuclease ABC subunit UvrA -
  OCU78_RS01680 galU 381083..381955 (-) 873 WP_137374387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU78_RS01685 qstR 382062..382709 (-) 648 WP_137374388.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU78_RS01690 ssb 382987..383544 (+) 558 WP_137374389.1 single-stranded DNA-binding protein Machinery gene
  OCU78_RS01695 csrD 383713..385704 (+) 1992 WP_137374390.1 RNase E specificity factor CsrD -
  OCU78_RS01700 - 385712..387154 (+) 1443 WP_137374391.1 MSHA biogenesis protein MshI -
  OCU78_RS01705 pilO 387154..387801 (+) 648 WP_137374392.1 type 4a pilus biogenesis protein PilO -
  OCU78_RS01710 - 387815..388129 (+) 315 WP_137374584.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20400.56 Da        Isoelectric Point: 5.2358

>NTDB_id=92039 OCU78_RS01690 WP_137374389.1 382987..383544(+) (ssb) [Vibrio gallaecicus strain CECT 7244]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGQQQQGGWGQPQQPAVQQQQQQQYNAPAQQKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=92039 OCU78_RS01690 WP_137374389.1 382987..383544(+) (ssb) [Vibrio gallaecicus strain CECT 7244]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTGGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCAAATGG
TGGTGCGGTAGCGAACATTACGATTGCAACGTCAGAATCATGGCGTGACAAAGCAACAGGCGAGCAACGCGAAAAAACAG
AATGGCACCGTGTTGCTTTGTTTGGCAAGCTAGCTGAAGTGGCTGGTGAGTACTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAGAGCGGTCAGGATCGTTACACTACAGAAGTTGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCGCAAGGTGGTGCTCCTGCTCAAGGCGGCATGGGGCAACAGCAACAAG
GTGGTTGGGGTCAACCGCAACAGCCTGCTGTTCAGCAGCAACAACAGCAGCAATATAATGCCCCTGCTCAACAAAAGGCA
CCGCAGCAAGCTCCTCAACAAGCTCAGCCGCAATACAATGAGCCACCTATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.818

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.573
  ssb Neisseria meningitidis MC58

46.703

98.378

0.459
  ssb Neisseria gonorrhoeae MS11

46.703

98.378

0.459

Multiple sequence alignment