Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU78_RS01685 Genome accession   NZ_AP025490
Coordinates   382062..382709 (-) Length   215 a.a.
NCBI ID   WP_137374388.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 377062..387709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS01675 uvrA 378118..380946 (-) 2829 WP_137374386.1 excinuclease ABC subunit UvrA -
  OCU78_RS01680 galU 381083..381955 (-) 873 WP_137374387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU78_RS01685 qstR 382062..382709 (-) 648 WP_137374388.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU78_RS01690 ssb 382987..383544 (+) 558 WP_137374389.1 single-stranded DNA-binding protein Machinery gene
  OCU78_RS01695 csrD 383713..385704 (+) 1992 WP_137374390.1 RNase E specificity factor CsrD -
  OCU78_RS01700 - 385712..387154 (+) 1443 WP_137374391.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24939.92 Da        Isoelectric Point: 9.5023

>NTDB_id=92038 OCU78_RS01685 WP_137374388.1 382062..382709(-) (qstR) [Vibrio gallaecicus strain CECT 7244]
MKQSSYARTIHFLCLDPESVYLHVDQIKKHMSVPLQLITPNELLLVNQKQRNRILLVDHKQFDNLLNHYENLPVIWKHYE
IILFNVTKRLTTAELIVFGILKGLFYSGSNQQDIAKGLHAIIDGQNWLPRQVASQLLFYYRNIVDTNTTPTNVDLTIREL
QVLRCLQAGSSNIQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92038 OCU78_RS01685 WP_137374388.1 382062..382709(-) (qstR) [Vibrio gallaecicus strain CECT 7244]
ATGAAACAATCCAGTTATGCTCGTACTATTCATTTTTTATGTTTAGACCCTGAAAGTGTTTATTTGCATGTGGATCAAAT
AAAGAAACATATGTCAGTACCATTGCAACTGATTACACCTAATGAACTGCTGTTAGTGAACCAAAAACAAAGAAACAGAA
TTTTACTTGTCGATCACAAACAATTCGATAACTTACTCAATCACTATGAAAACCTTCCGGTGATTTGGAAGCACTATGAA
ATTATATTATTTAATGTAACGAAAAGGCTAACGACCGCGGAGTTGATTGTCTTTGGGATATTAAAGGGCTTGTTTTACAG
TGGCAGTAACCAACAAGATATCGCAAAAGGGTTGCATGCCATTATAGACGGTCAAAATTGGCTACCTAGACAAGTTGCAA
GCCAACTTCTTTTTTATTACCGAAATATTGTGGATACTAATACCACTCCAACCAATGTCGACTTAACGATTCGAGAGCTC
CAAGTACTTCGGTGCCTGCAAGCTGGTTCATCAAACATTCAGATAGCAGACGATTTATTTATTAGTGAGTTCACCGTCAA
ATCACACCTTTATCAGATATTTAGAAAACTAGCAGTCAAAAACCGAGTTCAAGCCATTGCGTGGGCAAATCAGAATTTAC
TTTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.279

100

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

53.488

100

0.535
  qstR Vibrio cholerae strain A1552

51.402

99.535

0.512

Multiple sequence alignment