Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV50_RS14435 Genome accession   NZ_AP025487
Coordinates   3228980..3230503 (-) Length   507 a.a.
NCBI ID   WP_261903355.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3223980..3235503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS14410 - 3224144..3224407 (+) 264 WP_032548658.1 YihD family protein -
  OCV50_RS14415 ccoG 3224715..3226133 (+) 1419 WP_261903352.1 cytochrome c oxidase accessory protein CcoG -
  OCV50_RS14420 - 3226208..3227194 (+) 987 WP_261903353.1 serine/threonine protein kinase -
  OCV50_RS14425 - 3227245..3227844 (+) 600 WP_032548655.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV50_RS14430 - 3227992..3228948 (+) 957 WP_261903354.1 DUF2860 domain-containing protein -
  OCV50_RS14435 comM 3228980..3230503 (-) 1524 WP_261903355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV50_RS14440 ilvG 3230975..3232621 (+) 1647 WP_261903356.1 acetolactate synthase 2 catalytic subunit -
  OCV50_RS14445 ilvM 3232623..3232907 (+) 285 WP_032548651.1 acetolactate synthase 2 small subunit -
  OCV50_RS14450 - 3232920..3233870 (+) 951 WP_239842984.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55110.35 Da        Isoelectric Point: 8.1174

>NTDB_id=92027 OCV50_RS14435 WP_261903355.1 3228980..3230503(-) (comM) [Vibrio fortis strain LMG 21557]
MGLAIIHSRASVGVEAPAVTVEVHISNGMPGFSLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASEQLPETKVLSHEFIGELALSGELRRVKGVLPATLACDKASRALVVPHDNGEQAALVGQGEHKSAQTL
LEVCGYLCGQSTLNLNDVSEPRSQKHMTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINQHNWKLRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGER
GEGTQVVKQRVVQARSVMVARGGKPNALLGSREIEKHCPLDKQDAQFLETALHRLGLSIRAYHRIIKVARTIADLEGSEQ
IHKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92027 OCV50_RS14435 WP_261903355.1 3228980..3230503(-) (comM) [Vibrio fortis strain LMG 21557]
ATGGGACTCGCAATTATTCATAGTCGCGCCAGCGTAGGAGTGGAAGCGCCTGCGGTCACTGTTGAGGTACATATTAGTAA
CGGAATGCCGGGGTTCTCTTTAGTGGGATTACCAGAGACCACGGTGAAAGAGTCTAAAGACCGTGTACGCAGTGCGATCA
TCAACTCACGGTTCGAATTTCCAGCAAAGCGTATCACAGTCAATCTTGCTCCCGCTGATCTGCCCAAAGAGGGAGGGCGG
TTTGACTTGCCAATTGCGTTGGGTATTTTAGTCGCCTCTGAGCAGTTGCCTGAAACCAAAGTATTGAGCCATGAGTTCAT
AGGAGAGCTCGCCTTGTCTGGTGAATTGCGTAGGGTTAAAGGAGTACTGCCCGCAACATTGGCGTGCGATAAGGCGAGTC
GTGCGCTGGTGGTGCCCCATGATAACGGTGAGCAAGCAGCTTTGGTTGGGCAAGGGGAACACAAGTCAGCTCAAACATTA
CTGGAGGTGTGTGGTTATCTTTGTGGTCAAAGCACATTGAACTTAAATGATGTATCTGAGCCTCGATCTCAAAAGCACAT
GACTCGAGATCTGCAAGATATTATTGGTCAACAACAAGGGAAGCGAGCTCTAGAGATTGCGGCTGCTGGCAATCATAACT
TACTGTTTTTAGGCCCACCCGGCACGGGGAAAACCATGCTTGCTTCACGCCTGTGTGATTTGTTGCCTGAGATGAGTGAT
GATGAGGCAATGGAGACGGCTTCGGTGGCGTCACTTACCCAACAAGAGATCAATCAGCACAACTGGAAGCTGCGCCCGTT
TCGTTCCCCTCATCACTCCAGCTCTATGGCAGCTTTAGTAGGAGGCGGCTCGGTCCCAAGGCCGGGAGAGATCTCGCTGG
CGCATAATGGGTTGTTGTTCCTTGATGAGATGCCGGAGTTTGAGCGAAAGGTCCTTGATTCATTGCGAGAGCCATTGGAG
TCGGGAGAGATCATCATCTCACGTGCGGCGGGAAAGACTCGTTTCCCTGCGCGTTTTCAGCTAGTTGGCGCGTTGAATCC
AAGCCCGACGGGATACTATGAAGGTAATCAAGCACGAGCGAATCCACAGATTATTTTGCGTTATTTGAATCGGCTCTCTG
GTCCGCTCTTAGACCGTTTCGACATGTCGTTGGAGATCCCGCTTTTGCCCAAAGGTATGCTCGCTGAGGGAGGCGAACGA
GGTGAAGGGACACAGGTTGTTAAGCAGCGTGTGGTTCAGGCAAGGTCAGTGATGGTAGCGCGAGGGGGAAAACCCAATGC
ATTGCTGGGCAGTCGAGAAATTGAAAAGCATTGCCCGCTCGATAAACAAGATGCTCAATTTTTGGAGACGGCGCTGCATC
GGCTGGGTTTATCGATTCGTGCTTACCATCGCATCATCAAAGTCGCGCGTACAATAGCGGATCTTGAAGGGAGCGAACAA
ATTCACAAGAAGCACCTTTCAGAGGCGCTGGGGTATCGAGCGATGGATAGGTTGTTGAAGCAGTTGACGGCACAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Vibrio cholerae strain A1552

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

64.694

100

0.647
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.428

Multiple sequence alignment