Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV36_RS16200 Genome accession   NZ_AP025483
Coordinates   3567768..3569291 (-) Length   507 a.a.
NCBI ID   WP_135458795.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3562768..3574291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS16175 - 3562822..3563085 (+) 264 WP_017073848.1 YihD family protein -
  OCV36_RS16180 ccoG 3563413..3564831 (+) 1419 WP_017073846.1 cytochrome c oxidase accessory protein CcoG -
  OCV36_RS16185 - 3564906..3565892 (+) 987 WP_135458824.1 serine/threonine protein kinase -
  OCV36_RS16190 - 3565948..3566547 (+) 600 WP_004735755.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV36_RS16195 - 3566687..3567640 (+) 954 WP_135458794.1 DUF2860 domain-containing protein -
  OCV36_RS16200 comM 3567768..3569291 (-) 1524 WP_135458795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV36_RS16205 ilvG 3569763..3571409 (+) 1647 WP_135458797.1 acetolactate synthase 2 catalytic subunit -
  OCV36_RS16210 ilvM 3571411..3571695 (+) 285 WP_017073841.1 acetolactate synthase 2 small subunit -
  OCV36_RS16215 - 3571708..3572676 (+) 969 WP_102554511.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55598.78 Da        Isoelectric Point: 8.2024

>NTDB_id=91982 OCV36_RS16200 WP_135458795.1 3567768..3569291(-) (comM) [Vibrio echinoideorum strain DSM 107264]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADNVQRCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADLCGQAQLGLYRTEHHHVDVSDNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTKVVKERVKQARQLMLARNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGNEQ
IEKKHLSEALGYRAMDRLLKQLSAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=91982 OCV36_RS16200 WP_135458795.1 3567768..3569291(-) (comM) [Vibrio echinoideorum strain DSM 107264]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAAGCACCTGAAGTGACTGTAGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACGACGGTCAAAGAATCTAAAGATCGAGTGAGAAGTGCCATTA
TTAATTCTCGCTTTGAGTTTCCATCGAAAAGAATTACGGTCAACTTAGCCCCAGCTGATTTACCCAAAGAGGGAGGACGT
TTCGATCTGCCAATCGCGCTTGGGATTTTGGTGGCGTCGGATCAGTTACCGACATCAAAAATAGCTCAGCATGAATTTAT
CGGAGAATTAGCGTTATCAGGAGAGTTACGTTCTGTTAAAGGAGTATTACCAGCGACACTCGCTGCTGATAACGTGCAGC
GGTGTTTAGTAGTTCCTCATCATAACGGTGATCAAGCTGCGCTAGTGGGTAAGGGTGCGCATAAATCAGCACAAACGTTA
TTGGAGGTTTGCGCGGACCTGTGTGGTCAGGCTCAACTAGGGTTGTATCGAACAGAGCATCATCATGTCGATGTGTCTGA
TAATCGTGACTTACAAGATATTATTGGCCAACAGCAAGGCAAGCGAGCATTAGAGATAGCAGCGGCCGGTAACCATAACT
TGCTTTTCCTTGGCCCTCCCGGGACTGGCAAGACGATGCTGGCCTCGCGATTGCGCGATCTATTACCTGAGATGAGCAAT
GAAGAAGCGATGGAAACGGCTTCGGTAGCTTCTTTAACGCAACAAGAGATCAATCAGTACAACTGGAAGCAACGACCTTT
CCGTTCCCCACACCATTCGAGTTCGATGGCAGCATTGGTCGGTGGTGGCTCGATACCTCGCCCTGGTGAGATATCTTTGG
CGCATAATGGATTATTGTTTCTTGATGAGATGCCAGAATTTGAGCGTAAGGTGCTCGATTCATTGCGAGAGCCGCTAGAG
TCGGGCGAGATCATTATTTCACGCGTGGCAGGTAAGACGCGTTTTCCGGCGCGCTTTCAATTGGTGGGTGCGCTTAACCC
AAGCCCAACAGGATATTACGAAGGCAATCAAGCCCGAGCCAACCCGCAGATCATCTTGCGTTATCTCAATCGCTTATCGG
GGCCATTGCTTGATCGCTTTGATATGTCTCTGGAGATCCCTTTATTGCCTAAAGGGATGTTAGCCGAAGGCGGCGATCGT
GGAGAGACGACTAAAGTGGTCAAAGAGAGGGTCAAACAAGCGCGCCAGTTGATGTTAGCTAGGAACCATAAGTCGAATGC
ACTGCTAGGTAGCCGAGAAATCGAAAAGTATTGTCCATTAAGACGAGAAGATGCGGAGTTTCTAGAGACGGCGCTGCATC
GATTAGGCTTATCGATTCGTGCTTATCATCGAATCATCAAGGTAGCGCGAACTATTGCAGACCTAGAGGGTAATGAGCAG
ATTGAAAAGAAGCACTTATCGGAGGCGCTTGGCTATCGAGCGATGGATCGCTTGCTGAAACAACTCTCGGCTCAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

84.024

100

0.84
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

62.891

100

0.635
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

99.803

0.422

Multiple sequence alignment