Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV36_RS14250 Genome accession   NZ_AP025483
Coordinates   3175080..3175655 (-) Length   191 a.a.
NCBI ID   WP_135456111.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3170080..3180655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS14230 - 3170486..3170818 (-) 333 WP_135456115.1 MSHA biogenesis protein MshK -
  OCV36_RS14235 pilO 3170811..3171458 (-) 648 WP_017073013.1 type 4a pilus biogenesis protein PilO -
  OCV36_RS14240 - 3171458..3172900 (-) 1443 WP_102450757.1 MSHA biogenesis protein MshI -
  OCV36_RS14245 csrD 3172903..3174918 (-) 2016 WP_135456113.1 RNase E specificity factor CsrD -
  OCV36_RS14250 ssb 3175080..3175655 (-) 576 WP_135456111.1 single-stranded DNA-binding protein Machinery gene
  OCV36_RS14255 qstR 3175934..3176581 (+) 648 WP_017073009.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV36_RS14260 galU 3176738..3177610 (+) 873 WP_102573407.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV36_RS14265 uvrA 3177793..3180624 (+) 2832 WP_102573406.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21182.34 Da        Isoelectric Point: 5.2358

>NTDB_id=91978 OCV36_RS14250 WP_135456111.1 3175080..3175655(-) (ssb) [Vibrio echinoideorum strain DSM 107264]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGSWGQPQQPQQQQQQPQQQQQQYSAPA
QQQPKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=91978 OCV36_RS14250 WP_135456111.1 3175080..3175655(-) (ssb) [Vibrio echinoideorum strain DSM 107264]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTAGTTGGGGTCAGCCACAACAACCACAGCAGCAGCAGCAACAACCACAACAACAGCAACAGCAATACAGTGCTCCTGCT
CAACAGCAGCCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGA
TGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.275

100

0.801
  ssb Glaesserella parasuis strain SC1401

54.688

100

0.55
  ssb Neisseria meningitidis MC58

46.597

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.597

100

0.466

Multiple sequence alignment