Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV36_RS14255 Genome accession   NZ_AP025483
Coordinates   3175934..3176581 (+) Length   215 a.a.
NCBI ID   WP_017073009.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170934..3181581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS14240 - 3171458..3172900 (-) 1443 WP_102450757.1 MSHA biogenesis protein MshI -
  OCV36_RS14245 csrD 3172903..3174918 (-) 2016 WP_135456113.1 RNase E specificity factor CsrD -
  OCV36_RS14250 ssb 3175080..3175655 (-) 576 WP_135456111.1 single-stranded DNA-binding protein Machinery gene
  OCV36_RS14255 qstR 3175934..3176581 (+) 648 WP_017073009.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV36_RS14260 galU 3176738..3177610 (+) 873 WP_102573407.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV36_RS14265 uvrA 3177793..3180624 (+) 2832 WP_102573406.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25195.47 Da        Isoelectric Point: 9.8630

>NTDB_id=91979 OCV36_RS14255 WP_017073009.1 3175934..3176581(+) (qstR) [Vibrio echinoideorum strain DSM 107264]
MRKSRYARTLHFLCIDPSDTYLHVKEIEKHLFIPLYKMTADDLMLFDRKQSNRILLIDYKEVPKLVMVFPNLPVMWKNHE
IILFNVPQQLTTSELLTYGVLKGLFYDSEQKVKIAKGLKEVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91979 OCV36_RS14255 WP_017073009.1 3175934..3176581(+) (qstR) [Vibrio echinoideorum strain DSM 107264]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAGCGACACCTATCTGCATGTAAAAGAGAT
AGAAAAGCACTTATTTATTCCACTCTACAAGATGACAGCGGACGACTTGATGCTTTTCGATAGAAAACAGAGCAACCGTA
TCTTGCTCATCGATTACAAAGAGGTACCAAAGTTAGTCATGGTGTTCCCTAATTTACCCGTCATGTGGAAAAATCATGAG
ATCATATTGTTCAACGTCCCCCAGCAACTTACTACATCAGAGCTACTTACCTATGGTGTCTTAAAAGGGTTGTTTTATGA
TTCTGAACAAAAAGTTAAAATAGCAAAAGGGCTTAAAGAGGTCATTAATGGTGACAACTGGTTACCCAGAAAGGTAACGA
ACCAACTTCTTTTTTATTACCGCAATATGGTCAACACCAACACGACACCCACCAATGTCGATTTAACCATTAGGGAGATC
CAGGTGATTCGTTGCCTTCAATCTGGCTCATCAAACACTCAAATAGCCGATGATTTGTTTATTAGCGAATTCACCGTCAA
ATCTCACCTTTATCAGATATTCCGTAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATCGCCTGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

55.814

100

0.558
  qstR Vibrio parahaemolyticus RIMD 2210633

55.349

100

0.553
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment