Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VER99_RS14415 Genome accession   NZ_CP141822
Coordinates   3145756..3147279 (-) Length   507 a.a.
NCBI ID   WP_020333556.1    Uniprot ID   A0AAN1CXP0
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3140756..3152279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS14395 (VER99_14395) - 3141984..3142970 (+) 987 WP_024372656.1 serine/threonine protein kinase -
  VER99_RS14400 (VER99_14400) - 3143004..3143606 (+) 603 WP_014233398.1 thiol:disulfide interchange protein DsbA/DsbL -
  VER99_RS14405 (VER99_14405) - 3143650..3144528 (-) 879 WP_020333554.1 acyltransferase -
  VER99_RS14410 (VER99_14410) - 3144768..3145724 (+) 957 WP_020333555.1 DUF2860 domain-containing protein -
  VER99_RS14415 (VER99_14415) comM 3145756..3147279 (-) 1524 WP_020333556.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VER99_RS14420 (VER99_14420) ilvG 3147747..3149393 (+) 1647 WP_020333557.1 acetolactate synthase 2 catalytic subunit -
  VER99_RS14425 (VER99_14425) ilvM 3149405..3149689 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  VER99_RS14430 (VER99_14430) ilvD 3149857..3151698 (+) 1842 WP_020333559.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55091.08 Da        Isoelectric Point: 8.7808

>NTDB_id=919724 VER99_RS14415 WP_020333556.1 3145756..3147279(-) (comM) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHKSPKRKTTESHNRDLQDIIGQQQGKRALEIAAAGSHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEINEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLSRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEDR
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=919724 VER99_RS14415 WP_020333556.1 3145756..3147279(-) (comM) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTTGGGCTGCCAGAAACCACGGTAAAAGAATCAAAGGATCGTGTACGCAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAACGCATTACGGTCAACTTAGCTCCGGCGGATTTACCCAAAGAGGGCGGACGC
TTTGACTTACCCATTGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCATTGTCTGGAGGCTTAAGGCCAGTAAAAGGGGTGCTACCTGCCGCACTCGCTGCAAGCAAGTTTCAGC
GCCATTTGGTCGTGCCACATGTGAATGGTGATCAGGCGGCGCTGGTGGGTAAAGAACAGCATAAATCCGCTCAGTCGCTG
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATTTGCATAAATCACCTAAGCGTAAAACAACAGAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATTGCTGCAGCAGGAAGCCATAACT
TACTTTTCCTTGGCCCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTATTACCTGAAATGAGTGAT
GATGAAGCGATGGAAACCGCATCCGTCGCGTCATTAACACAAAGCGAAATCAATGAGCATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCATTCTAGTTCGATGGCGGCATTGGTCGGCGGAGGTTCGGTTCCGAGGCCGGGTGAAATTTCTCTGG
CCCATAATGGCTTGTTGTTTCTGGATGAAATGCCGGAGTTCGATCGTAAGGTGCTGGATTCGCTGCGAGAACCGCTGGAG
TCGGGCGAAATCATCATCTCTCGAGCTCAGGGAAAAACTCGATTTCCTGCCCGCTTTCAGCTGGTGGGCGCACTCAACCC
CAGTCCGACAGGTTATTACGAAGGCAACCAGGCACGCACTAACCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTCGATCGATTCGATATGTCTCTGGAAATTCCTGCTTTGCCAAAGGGCACATTATCTGAGGGTGGGGACCGC
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTTAATGACGCACGTCAGCAGATGTTAAGTCGCAGCGGTAAGGTGAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCGTTACAAAAAAGTGATGCAGAGTTTCTGGAGACAGCTTTACATA
GACTGGGACTGTCCATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCCGATCTCGACGGGGAAGATCGA
ATTGAGCGCTCCCATCTGGCGGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.688

100

0.937
  comM Vibrio cholerae strain A1552

84.418

100

0.844
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.395

97.83

0.483
  comM Legionella pneumophila strain ERS1305867

49.395

97.83

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446