Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VER99_RS12615 Genome accession   NZ_CP141822
Coordinates   2770880..2771419 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2765880..2776419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS12595 (VER99_12595) - 2766204..2766536 (-) 333 WP_020334514.1 hypothetical protein -
  VER99_RS12600 (VER99_12600) gspM 2766529..2767179 (-) 651 WP_020334515.1 type II secretion system protein GspM -
  VER99_RS12605 (VER99_12605) - 2767176..2768621 (-) 1446 WP_020334516.1 hypothetical protein -
  VER99_RS12610 (VER99_12610) csrD 2768633..2770642 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  VER99_RS12615 (VER99_12615) ssb 2770880..2771419 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  VER99_RS12620 (VER99_12620) qstR 2771697..2772341 (+) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  VER99_RS12625 (VER99_12625) galU 2772521..2773393 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VER99_RS12630 (VER99_12630) uvrA 2773542..2776364 (+) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=919714 VER99_RS12615 WP_014233117.1 2770880..2771419(-) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=919714 VER99_RS12615 WP_014233117.1 2770880..2771419(-) (ssb) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469