Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VER99_RS12620 Genome accession   NZ_CP141822
Coordinates   2771697..2772341 (+) Length   214 a.a.
NCBI ID   WP_020334518.1    Uniprot ID   A0AAN1CXG3
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2766697..2777341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VER99_RS12605 (VER99_12605) - 2767176..2768621 (-) 1446 WP_020334516.1 hypothetical protein -
  VER99_RS12610 (VER99_12610) csrD 2768633..2770642 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  VER99_RS12615 (VER99_12615) ssb 2770880..2771419 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  VER99_RS12620 (VER99_12620) qstR 2771697..2772341 (+) 645 WP_020334518.1 LuxR C-terminal-related transcriptional regulator Regulator
  VER99_RS12625 (VER99_12625) galU 2772521..2773393 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VER99_RS12630 (VER99_12630) uvrA 2773542..2776364 (+) 2823 WP_020334520.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24489.49 Da        Isoelectric Point: 9.9863

>NTDB_id=919715 VER99_RS12620 WP_020334518.1 2771697..2772341(+) (qstR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKKSAYARKLFLISMEENTPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=919715 VER99_RS12620 WP_020334518.1 2771697..2772341(+) (qstR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATACGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAAATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAATTTGCCACTGGTGTGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAGCTAAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCACCCGCGACCGTGGATCTTACCATTCGGGAATTACAG
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

87.85

100

0.879
  qstR Vibrio cholerae strain A1552

53.953

100

0.542