Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCW38_RS14905 Genome accession   NZ_AP025480
Coordinates   3383739..3385262 (-) Length   507 a.a.
NCBI ID   WP_261894703.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3378739..3390262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS14880 - 3378793..3379056 (+) 264 WP_010433308.1 YihD family protein -
  OCW38_RS14885 ccoG 3379384..3380802 (+) 1419 WP_016767534.1 cytochrome c oxidase accessory protein CcoG -
  OCW38_RS14890 - 3380877..3381863 (+) 987 WP_010433301.1 serine/threonine protein kinase -
  OCW38_RS14895 - 3381919..3382518 (+) 600 WP_010433299.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCW38_RS14900 - 3382658..3383611 (+) 954 WP_065100099.1 DUF2860 domain-containing protein -
  OCW38_RS14905 comM 3383739..3385262 (-) 1524 WP_261894703.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCW38_RS14910 ilvG 3385734..3387380 (+) 1647 WP_261894705.1 acetolactate synthase 2 catalytic subunit -
  OCW38_RS14915 ilvM 3387382..3387666 (+) 285 WP_010433257.1 acetolactate synthase 2 small subunit -
  OCW38_RS14920 - 3387679..3388647 (+) 969 WP_010433254.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55591.80 Da        Isoelectric Point: 8.1981

>NTDB_id=91938 OCW38_RS14905 WP_261894703.1 3383739..3385262(-) (comM) [Vibrio cyclitrophicus strain LMG 21359]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPASKIAQHEFIGELALSGELRSVKGVLPATLAADRVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASIASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=91938 OCW38_RS14905 WP_261894703.1 3383739..3385262(-) (comM) [Vibrio cyclitrophicus strain LMG 21359]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACAGTCGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTTAACTTAGCTCCCGCAGATTTACCGAAAGAAGGTGGGCGG
TTTGACTTGCCTATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCGCATCAAAAATAGCTCAACATGAATTTAT
TGGTGAGTTAGCGCTGTCGGGTGAGTTGCGCTCGGTGAAAGGGGTACTGCCTGCAACACTCGCTGCTGACAGAGTTGAGC
GTTGCTTAGTCGTACCGCATCACAATGGCGATCAGGCTGCTTTAGTCGGTAAAGGGGCACATAAGTCGGCGCAAACCTTG
TTGGAGGTTTGTGCAGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAGCAGCAAGGCAAGCGAGCATTAGAAATCGCTGCTGCTGGTAACCATAATT
TATTGTTCCTCGGCCCGCCTGGAACTGGAAAAACGATGTTGGCCTCGCGATTACGCGATTTATTGCCTGAGATGAGTAAC
GAAGAAGCGATGGAAACGGCTTCGATCGCTTCTTTAACTCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TCGGTCCCCCCATCATTCGAGCTCAATGGCAGCATTGGTGGGTGGTGGTTCGGTGCCTCGCCCTGGTGAGATATCTTTGG
CGCATAACGGGTTATTGTTTCTTGATGAGATGCCTGAGTTTGAGCGCAAGGTACTCGATTCTTTGCGAGAGCCGTTGGAG
TCGGGTGAAATCATTATCTCTCGTGCGGCAGGTAAGACGCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCTACAGGTTATTATGAAGGCAATCAAGCTCGAGCGAACCCACAAATCATCCTTCGCTACCTCAATCGACTATCAG
GGCCGTTATTGGACCGATTCGATATGTCGTTAGAGATCCCCCTGTTGCCCAAAGGGATGTTAGCCGAAGGTGGCGACCGT
GGTGAAACGACTCAAGTCGTAAAGCAAAGGGTCAGGCAGGCTCGTGAGCTGATGCTATCTCGCAATCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCGTTAAGACGTGAGGATGCGGAGTTTCTGGAAACGGCATTGCACC
GATTGGGCTTATCGATTCGCGCTTACCACCGGATCATCAAGGTGGCGCGAACCATTGCTGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACCTATCGGAAGCGCTTGGCTATCGAGCCATGGATCGGTTGTTGAAGCAACTCACAGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Vibrio campbellii strain DS40M4

83.235

100

0.832
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

62.745

100

0.631
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment