Detailed information NTG0919295

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: VA613_RS01445
• Genome accession: NZ_CP141769
• Coordinates: 314177..315664 (-)
• Length: 495 a.a.
• NCBI ID: WP_324780091.1
• Uniprot ID: -
• Organism: Thiobacillus sedimenti strain SCUT-2
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 309177..320664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA613_RS01430 (VA613_01430)	xdp1	311831..312664 (+)	834	WP_324780088.1	exosortase-dependent surface protein XDP1	-
VA613_RS01435 (VA613_01435)	-	312766..313152 (+)	387	WP_324780089.1	rhodanese-like domain-containing protein	-
VA613_RS01440 (VA613_01440)	-	313149..314180 (-)	1032	WP_324780090.1	VIT1/CCC1 transporter family protein	-
VA613_RS01445 (VA613_01445)	comM	314177..315664 (-)	1488	WP_324780091.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
VA613_RS01450 (VA613_01450)	-	315669..315932 (-)	264	WP_324780092.1	accessory factor UbiK family protein	-
VA613_RS01455 (VA613_01455)	-	316176..316982 (+)	807	WP_324780093.1	TorF family putative porin	-
VA613_RS01460 (VA613_01460)	glnK	317051..317389 (+)	339	WP_324780094.1	P-II family nitrogen regulator	-
VA613_RS01465 (VA613_01465)	-	317401..318918 (+)	1518	WP_324780095.1	ammonium transporter	-
VA613_RS01470 (VA613_01470)	-	318997..319545 (-)	549	WP_407702856.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
VA613_RS01475 (VA613_01475)	-	319760..320233 (-)	474	WP_324780096.1	hypothetical protein	-

Sequence

Protein

• Length: 495 a.a.
• Molecular weight: 52375.02 Da
• Isoelectric Point: 8.1022

>NTDB_id=919295 VA613_RS01445 WP_324780091.1 314177..315664(-) (comM) [Thiobacillus sedimenti strain SCUT-2]
MAVAVVTSRALNGMHAPEVVVEAHLANGLPAFTLVGLPETEVKEARDRVRAAIQNARFEFPARRITVNLAPADLPKESGR
FDLPIALAILAASGQIPADRFKQAEFAGELALTGGLRPVRGALAMALATRAAGRQLVLPVESAGEAVLASGVDVFGATSL
LEVCGWLAGQAPLAAPTARAADPVPDYPDFADVKGQSATKRALEVAAAGGHSVLLAGPPGTGKSMLAARFPGILPEMDEA
EALEAAAVASLNGGFRQEHWRRRPFRAPHHTASAVALVGGGNTPRPGEISLAHHGVLFLDELPEFPRQVLEVLREPLETG
HITISRAARQADFPARFQLVAAMNPCPCGYLGHPTQACRDTPDQIARYRARISGPLLDRIDIQVGVPALTEDELLQAAPG
EPSAAIRARVQAARDRQIQRQGKPNAALGTRDIERFCGLDAAGEALLKQAIARLNLSARAYHRVLRLARTVADLAASDAI
APVHLAEAIQYRRQA

Nucleotide

• Length: 1488 bp

>NTDB_id=919295 VA613_RS01445 WP_324780091.1 314177..315664(-) (comM) [Thiobacillus sedimenti strain SCUT-2]
GTGGCCGTCGCCGTCGTCACCAGCCGGGCCCTGAACGGCATGCATGCGCCCGAGGTCGTCGTCGAGGCGCACCTCGCCAA
CGGCCTGCCTGCCTTCACCTTGGTCGGCCTGCCGGAAACCGAAGTGAAGGAGGCGCGCGACCGCGTCCGCGCAGCGATCC
AGAACGCCCGCTTCGAGTTCCCGGCGCGCCGCATCACGGTCAACCTGGCACCGGCCGATCTGCCGAAGGAATCCGGCCGC
TTCGATCTTCCCATCGCCCTGGCGATCCTGGCCGCGTCGGGCCAGATCCCGGCCGATCGTTTCAAGCAGGCGGAATTCGC
GGGCGAACTCGCGCTGACCGGCGGACTGCGCCCGGTGCGCGGCGCGCTGGCGATGGCCCTGGCCACCCGCGCCGCGGGCC
GCCAGCTGGTGCTGCCGGTCGAATCGGCCGGCGAAGCCGTCCTGGCGAGCGGCGTCGACGTGTTCGGCGCGACCAGCCTG
CTCGAGGTGTGCGGCTGGCTCGCGGGCCAGGCGCCGCTTGCCGCACCCACGGCGCGCGCAGCGGATCCCGTGCCCGACTA
CCCGGACTTCGCCGACGTCAAGGGCCAGAGCGCCACCAAGCGCGCGCTCGAGGTCGCCGCGGCGGGTGGTCATTCGGTGC
TGCTGGCGGGCCCGCCCGGCACCGGCAAGTCGATGCTCGCCGCGCGCTTCCCCGGCATCCTCCCGGAGATGGATGAGGCC
GAAGCGCTGGAGGCGGCGGCGGTCGCCTCGCTCAACGGCGGCTTCCGCCAGGAGCACTGGCGCCGCCGTCCGTTTCGCGC
CCCGCATCACACCGCCTCGGCCGTGGCGCTGGTCGGCGGCGGCAACACGCCGCGCCCCGGCGAGATCTCGCTCGCGCACC
ATGGCGTGCTGTTCCTCGACGAGCTGCCCGAATTCCCGCGGCAGGTACTGGAGGTGCTGCGCGAGCCGCTCGAGACGGGC
CACATCACGATCTCGCGCGCGGCCCGGCAGGCCGACTTCCCGGCGCGCTTCCAGCTCGTCGCAGCGATGAACCCCTGCCC
CTGCGGCTATCTCGGCCACCCCACCCAGGCCTGCCGCGACACGCCGGACCAGATCGCGCGCTACCGCGCGCGCATTTCGG
GACCGCTGCTCGACCGCATCGACATCCAGGTCGGCGTGCCGGCGCTGACCGAGGACGAACTGCTGCAGGCGGCGCCGGGC
GAGCCCAGCGCCGCCATCCGTGCCCGCGTGCAGGCGGCGCGCGACCGGCAGATCCAGCGGCAGGGCAAGCCGAATGCCGC
GCTCGGCACCCGTGACATCGAACGCTTCTGCGGCCTCGATGCCGCCGGCGAAGCGCTGCTCAAGCAGGCGATCGCGCGGC
TGAACCTGTCGGCTCGCGCCTATCACCGCGTGCTCCGGCTCGCGCGCACGGTCGCCGACCTCGCGGCCAGCGATGCCATC
GCGCCGGTCCATCTTGCCGAGGCCATCCAGTACCGGAGGCAGGCATGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-141)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (189-393)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (400-492)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	55.354	100	0.554
comM	Vibrio cholerae strain A1552	54.949	100	0.549
comM	Haemophilus influenzae Rd KW20	52.505	100	0.529
comM	Legionella pneumophila str. Paris	51.6	100	0.521
comM	Legionella pneumophila strain ERS1305867	51.6	100	0.521
comM	Glaesserella parasuis strain SC1401	50.902	100	0.513
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.941	100	0.469