Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN51_RS03045 Genome accession   NZ_CP141727
Coordinates   620727..621143 (-) Length   138 a.a.
NCBI ID   WP_279365405.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615727..626143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS03025 (VNN51_03025) - 618004..618873 (+) 870 WP_279359040.1 RluA family pseudouridine synthase -
  VNN51_RS03030 (VNN51_03030) - 618960..619805 (-) 846 WP_017368750.1 zinc ABC transporter substrate-binding protein -
  VNN51_RS03035 (VNN51_03035) comGF 620041..620481 (-) 441 WP_017368749.1 competence type IV pilus minor pilin ComGF -
  VNN51_RS03040 (VNN51_03040) comGE 620462..620695 (-) 234 WP_279359361.1 competence type IV pilus minor pilin ComGE -
  VNN51_RS03045 (VNN51_03045) comGD 620727..621143 (-) 417 WP_279365405.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN51_RS03050 (VNN51_03050) comYC 621118..621423 (-) 306 WP_017368746.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN51_RS03055 (VNN51_03055) comGB 621442..622461 (-) 1020 WP_279360738.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN51_RS03060 (VNN51_03060) comGA 622400..623344 (-) 945 WP_017368744.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN51_RS03065 (VNN51_03065) rpsU 623533..623709 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN51_RS03070 (VNN51_03070) guaB 623834..625315 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15876.49 Da        Isoelectric Point: 10.1981

>NTDB_id=919031 VNN51_RS03045 WP_279365405.1 620727..621143(-) (comGD) [Lactococcus formosensis strain M20011502 FF20a2]
MQNVMSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQRITIFLPYQKKTISYQLEIGSGKYKKSIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=919031 VNN51_RS03045 WP_279365405.1 620727..621143(-) (comGD) [Lactococcus formosensis strain M20011502 FF20a2]
ATGCAAAACGTAATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCGGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAGAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGCATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.602

96.377

0.391
  comYD Streptococcus mutans UA159

40.602

96.377

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362