Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   VNN51_RS01340 Genome accession   NZ_CP141727
Coordinates   272773..273468 (-) Length   231 a.a.
NCBI ID   WP_017368870.1    Uniprot ID   A0A9Q8Y2F9
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 267773..278468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS01325 (VNN51_01325) - 268490..269227 (-) 738 WP_017368873.1 amino acid ABC transporter ATP-binding protein -
  VNN51_RS01330 (VNN51_01330) - 269228..270799 (-) 1572 WP_017368872.1 ABC transporter permease subunit -
  VNN51_RS01335 (VNN51_01335) covS 271195..272685 (-) 1491 WP_017368871.1 HAMP domain-containing histidine kinase Regulator
  VNN51_RS01340 (VNN51_01340) covR 272773..273468 (-) 696 WP_017368870.1 response regulator transcription factor Regulator
  VNN51_RS01345 (VNN51_01345) - 273569..274120 (-) 552 WP_279359205.1 YceD family protein -
  VNN51_RS01350 (VNN51_01350) - 274338..274580 (-) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  VNN51_RS01355 (VNN51_01355) - 274692..276596 (-) 1905 WP_279360506.1 fructose-specific PTS transporter subunit EIIC -
  VNN51_RS01360 (VNN51_01360) pfkB 276630..277547 (-) 918 WP_279359203.1 1-phosphofructokinase -
  VNN51_RS01365 (VNN51_01365) - 277544..278245 (-) 702 WP_017368868.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 27023.75 Da        Isoelectric Point: 5.2713

>NTDB_id=919014 VNN51_RS01340 WP_017368870.1 272773..273468(-) (covR) [Lactococcus formosensis strain M20011502 FF20a2]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQDNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTVEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=919014 VNN51_RS01340 WP_017368870.1 272773..273468(-) (covR) [Lactococcus formosensis strain M20011502 FF20a2]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGGTATCAAACTGCGGTTCAAGACAATGGTCGTAAAGGTCTTGAAGAAGCGATGTCAAAAGATTATGATTTGATTTTGC
TCGACTTAATGCTCCCAGAGCTGGATGGCTTTGAAGTTGCACGACGCTTACGCCGTGAAAAAGATACACACATTATCATG
ATGACTGCACGTGATTCAACAATGGACCGTGTAGCAGGTCTTGATATTGGAGCGGATGATTATATTACAAAACCATTCGC
AATTGAAGAATTGTTAGCACGTGTGCGTTCACTCTTCCGTCGTGAAGATCATATCCATACTGTTGAAAAGTCAGACAACA
CTTCATTCCGTGACTTAGTAATTGATAAAACAAACCGCACAGTACACCGTGGTAAAAAAGTCATTGACCTTACACGTCGT
GAATACGACTTACTCTTGACTTTGATGCAAAATGTGGGGGACGTCGTAACACGCGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTTGACGTTTATATCCGTTACCTACGTAACAAGATTGATGTCGAAGGCCGTG
AAAGTTATATCCAAACTGTTCGTGGCATGGGCTATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

88.646

99.134

0.879
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424