Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN28_RS02815 Genome accession   NZ_CP141725
Coordinates   573284..573700 (-) Length   138 a.a.
NCBI ID   WP_165711775.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568284..578700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS02795 (VNN28_02795) - 570561..571430 (+) 870 WP_338997824.1 RluA family pseudouridine synthase -
  VNN28_RS02800 (VNN28_02800) - 571517..572362 (-) 846 WP_017368750.1 zinc ABC transporter substrate-binding protein -
  VNN28_RS02805 (VNN28_02805) comGF 572598..573038 (-) 441 WP_017368749.1 competence type IV pilus minor pilin ComGF -
  VNN28_RS02810 (VNN28_02810) comGE 573019..573252 (-) 234 WP_243416060.1 competence type IV pilus minor pilin ComGE -
  VNN28_RS02815 (VNN28_02815) comGD 573284..573700 (-) 417 WP_165711775.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN28_RS02820 (VNN28_02820) comYC 573675..573980 (-) 306 WP_017368746.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN28_RS02825 (VNN28_02825) comGB 573999..575018 (-) 1020 WP_338998085.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN28_RS02830 (VNN28_02830) comGA 574957..575901 (-) 945 WP_338997825.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN28_RS02835 (VNN28_02835) rpsU 576088..576264 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN28_RS02840 (VNN28_02840) guaB 576389..577870 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15917.59 Da        Isoelectric Point: 10.3023

>NTDB_id=918987 VNN28_RS02815 WP_165711775.1 573284..573700(-) (comGD) [Lactococcus formosensis strain M03102409 EE5d7]
MQNVMSRIKALTLLESLLVLFLCSFVLFLFSSSVKQSVRIARSEIFILQFERLYKDTQRMAGLKGQRQTLSARNGTLYSQ
EEMLKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918987 VNN28_RS02815 WP_165711775.1 573284..573700(-) (comGD) [Lactococcus formosensis strain M03102409 EE5d7]
ATGCAAAACGTAATGTCCCGAATTAAAGCTTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAAGTTCGGTGAAACAAAGTGTGAGGATAGCACGTTCAGAGATTTTTATTTTACAATTTGAACGTCTGT
ATAAGGATACCCAGCGCATGGCTGGACTAAAGGGGCAGCGACAGACATTGAGTGCGCGTAATGGCACACTATATAGCCAA
GAAGAAATGTTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACGATCTCTTATCAATTGGAAATTGGAAGTGGAAAATATA
AGAAGAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

41.667

95.652

0.399
  comYD Streptococcus mutans UA159

41.667

95.652

0.399
  comGD/cglD Streptococcus mitis SK321

40.31

93.478

0.377
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362