Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN48_RS09165 Genome accession   NZ_CP141723
Coordinates   1876580..1877584 (+) Length   334 a.a.
NCBI ID   WP_017368903.1    Uniprot ID   A0A9X4P829
Organism   Lactococcus formosensis strain PAQ-208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1871580..1882584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS09145 (VNN48_09140) - 1871962..1872666 (+) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -
  VNN48_RS09150 (VNN48_09145) - 1872716..1873540 (-) 825 WP_407281156.1 HAD family hydrolase -
  VNN48_RS09155 (VNN48_09150) - 1873903..1875324 (+) 1422 WP_017368901.1 NCS2 family permease -
  VNN48_RS09160 (VNN48_09155) - 1875402..1876502 (+) 1101 WP_213432063.1 YdcF family protein -
  VNN48_RS09165 (VNN48_09160) coiA 1876580..1877584 (+) 1005 WP_017368903.1 competence protein CoiA Machinery gene
  VNN48_RS09170 (VNN48_09165) pepF 1877568..1879373 (+) 1806 WP_407281157.1 oligoendopeptidase F Regulator
  VNN48_RS09175 (VNN48_09170) - 1879373..1880056 (+) 684 WP_096368583.1 O-methyltransferase -
  VNN48_RS09180 (VNN48_09175) - 1880154..1881062 (+) 909 WP_407281158.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 40032.96 Da        Isoelectric Point: 8.4066

>NTDB_id=918958 VNN48_RS09165 WP_017368903.1 1876580..1877584(+) (coiA) [Lactococcus formosensis strain PAQ-208]
MLNALDKDGNTINLFDNKPINPPFYCPACKSSLRLKKGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQSFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWAPPGLNLLTFDFINERRENFFQVDTSLEKYYHSFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918958 VNN48_RS09165 WP_017368903.1 1876580..1877584(+) (coiA) [Lactococcus formosensis strain PAQ-208]
ATGTTGAATGCATTGGATAAAGACGGAAACACAATTAATCTCTTTGATAATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAAAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGATTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAGTATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTGAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTGCCAGAGCAAGAAGAGTTACAGTCTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGGAAAAAATTTGTTAGACCTCAACTGGAAGAAATGCTACTGGGCACCTCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGAGAAAATTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCATAGCTTCTACGAAAGTTTTCAGTCACAAGAACACGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.134

98.204

0.512
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

41.159

98.204

0.404