Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN48_RS09170 Genome accession   NZ_CP141723
Coordinates   1877568..1879373 (+) Length   601 a.a.
NCBI ID   WP_407281157.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1872568..1884373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS09150 (VNN48_09145) - 1872716..1873540 (-) 825 WP_407281156.1 HAD family hydrolase -
  VNN48_RS09155 (VNN48_09150) - 1873903..1875324 (+) 1422 WP_017368901.1 NCS2 family permease -
  VNN48_RS09160 (VNN48_09155) - 1875402..1876502 (+) 1101 WP_213432063.1 YdcF family protein -
  VNN48_RS09165 (VNN48_09160) coiA 1876580..1877584 (+) 1005 WP_017368903.1 competence protein CoiA Machinery gene
  VNN48_RS09170 (VNN48_09165) pepF 1877568..1879373 (+) 1806 WP_407281157.1 oligoendopeptidase F Regulator
  VNN48_RS09175 (VNN48_09170) - 1879373..1880056 (+) 684 WP_096368583.1 O-methyltransferase -
  VNN48_RS09180 (VNN48_09175) - 1880154..1881062 (+) 909 WP_407281158.1 peptidyl-prolyl cis-trans isomerase -
  VNN48_RS09185 (VNN48_09180) alaS 1881313..1883931 (+) 2619 WP_017368907.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69798.21 Da        Isoelectric Point: 4.5634

>NTDB_id=918959 VNN48_RS09170 WP_407281157.1 1877568..1879373(+) (pepF) [Lactococcus formosensis strain PAQ-208]
MAKKRDEIAENLTWDLSTVFENDAAWELELKSVSEKLETVNRYEGHLLDSAQSLLEITEVELEISRAVEKIYVYASMKHD
QDTQVSRYQEYDARATNLYAKFGEMFAFYEPEFLALTPERYESFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLAGA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILGLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKAEQEGKVLTSE
FMNQLYAGLNEKYYGLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918959 VNN48_RS09170 WP_407281157.1 1877568..1879373(+) (pepF) [Lactococcus formosensis strain PAQ-208]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACGGTAAACCGCTACGAAGGACATCTTTTAGATAGTGCTCAAAGCT
TGTTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGTGCTGTGGAAAAGATTTATGTTTATGCTTCAATGAAGCATGAT
CAAGATACGCAAGTGAGTCGTTACCAAGAATATGATGCTAGAGCTACAAATTTATATGCTAAGTTTGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGAGCCCAAGTTGGAACAGT
ATTCTCATATGTTTGAACGGCTTTTTGCTAAAAAAGAGCATATTTTAAGTCCAAAAGAGGAAAAACTGTTAGCCGGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGATAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGTAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGTTATATCAAATTACGCGAGCAAATTTTAGGTT
TAGATGATGATTTGAAGATGTATGATGTCTACACCCCCTTATCTGACTTGGATTATAAGTTTAACTATCCCGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGCGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAACCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAAATTCATAAAGCTGAGCAAGAAGGAAAAGTCCTAACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATGGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCGCATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGCTTTGCAGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGATCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

65.225

100

0.652