Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OC193_RS15585 Genome accession   NZ_AP025476
Coordinates   3444402..3445925 (-) Length   507 a.a.
NCBI ID   WP_048657825.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3439402..3450925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS15560 - 3439471..3439734 (+) 264 WP_009848104.1 YihD family protein -
  OC193_RS15565 ccoG 3440060..3441478 (+) 1419 WP_048662691.1 cytochrome c oxidase accessory protein CcoG -
  OC193_RS15570 - 3441553..3442539 (+) 987 WP_048662692.1 serine/threonine protein kinase -
  OC193_RS15575 - 3442595..3443194 (+) 600 WP_048657827.1 thiol:disulfide interchange protein DsbA/DsbL -
  OC193_RS15580 - 3443333..3444286 (+) 954 WP_048657826.1 DUF2860 domain-containing protein -
  OC193_RS15585 comM 3444402..3445925 (-) 1524 WP_048657825.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OC193_RS15590 ilvG 3446398..3448044 (+) 1647 WP_048662693.1 acetolactate synthase 2 catalytic subunit -
  OC193_RS15595 ilvM 3448046..3448330 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  OC193_RS15600 - 3448343..3449311 (+) 969 WP_048657823.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55484.60 Da        Isoelectric Point: 7.9067

>NTDB_id=91895 OC193_RS15585 WP_048657825.1 3444402..3445925(-) (comM) [Vibrio crassostreae strain LMG 22240]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQTMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=91895 OC193_RS15585 WP_048657825.1 3444402..3445925(-) (comM) [Vibrio crassostreae strain LMG 22240]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTGCATATAAGCAA
CGGAATGCCTGGCTTTACGCTGGTGGGGCTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCCCGCTTTGAGTTTCCATCCAAAAGAATCACGGTCAACCTCGCCCCTGCCGATTTACCCAAGGAAGGAGGTCGT
TTCGACCTGCCAATCGCGCTTGGGATTTTAGTGGCATCGGATCAGCTACCGACATCAAAAATAGCTCAGCATGAATTCAT
CGGTGAGTTGGCGTTGTCAGGAGAGCTACGTTCAGTAAAGGGTGTGTTGCCAGCGACGTTAGCCGCCGATAGCGTCGAAC
GATGCTTAGTTGTCCCACATCATAACGGTGATCAGGCAGCGTTGGTGGGCAAGGGAGCCCATAAATCAGCGCAAACCTTG
TTAGAGGTTTGCGCGGACATGTGTGGACAGGCTCAGCTTGGCCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTTCAAGATATTATCGGTCAACAACAAGGCAAGCGAGCTCTGGAGATAGCAGCCGCTGGCAACCATAACT
TACTGTTCCTTGGCCCTCCGGGAACCGGAAAAACCATGCTCGCTTCTCGGTTACGCGATTTGTTACCGGAGATGAGTGAT
GACGAGGCGATGGAAACCGCATCGGTGGCCTCGCTAACGCAGCAAGAGATCAATCAATACAATTGGAAGCAGAGGCCATT
TCGTTCACCTCACCATTCGAGTTCGATGGCTGCATTAGTGGGAGGTGGGTCAGTCCCTCGCCCCGGTGAGATCTCTCTGG
CGCATAATGGATTACTGTTTCTAGATGAGATGCCGGAGTTTGAACGCAAGGTGCTCGATTCACTGCGCGAGCCGCTAGAG
TCGGGCGAGATTATTATTTCACGCGCGGCAGGTAAGACTCGTTTCCCTGCTCGCTTTCAGTTGGTCGGCGCCTTGAATCC
AAGCCCGACTGGTTATTACGAAGGCAATCAAGCACGCGCTAATCCGCAGATCATTTTGCGTTATCTTAATCGATTGTCTG
GGCCATTGCTTGATCGCTTTGATATGTCCTTAGAGATCCCACTACTGCCTAAAGGGATGTTGGCTGAAGGTGGCGATCGT
GGTGAAACCACCCAAGTCGTAAAACAAAGGGTCAAACAGGCTCGTCAAACCATGTTATCTAGAAACCATAAATCGAATGC
ACTGCTCGGTAGTCGAGAAATAGAGAAGTATTGCCCATTGCGACGTGAAGATGCGGAGTTTCTCGAGACTGCACTGCATC
GATTGGGTCTGTCGATTCGTGCTTATCATCGAATCATTAAGGTAGCACGAACCATTGCCGACCTTGACGGTAACGAGCAG
ATCGAAAAGAAACACCTATCAGAAGCGTTGGGCTATCGAGCTATGGATAGATTATTGAAGCAACTCACGGCACAAGCTGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.629

100

0.836
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

99.803

0.422

Multiple sequence alignment