Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OC193_RS01720 Genome accession   NZ_AP025476
Coordinates   350584..351138 (+) Length   184 a.a.
NCBI ID   WP_016797199.1    Uniprot ID   A0A0T7CUH8
Organism   Vibrio crassostreae strain LMG 22240     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345584..356138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS01705 uvrA 345647..348478 (-) 2832 WP_048662717.1 excinuclease ABC subunit UvrA -
  OC193_RS01710 galU 348629..349501 (-) 873 WP_048657943.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OC193_RS01715 qstR 349658..350305 (-) 648 WP_048662718.1 LuxR C-terminal-related transcriptional regulator Regulator
  OC193_RS01720 ssb 350584..351138 (+) 555 WP_016797199.1 single-stranded DNA-binding protein Machinery gene
  OC193_RS01725 csrD 351300..353315 (+) 2016 WP_048662719.1 RNase E specificity factor CsrD -
  OC193_RS01730 - 353318..354760 (+) 1443 WP_048662720.1 MSHA biogenesis protein MshI -
  OC193_RS01735 pilO 354760..355407 (+) 648 WP_048662721.1 type 4a pilus biogenesis protein PilO -
  OC193_RS01740 - 355400..355732 (+) 333 WP_048657948.1 hypothetical protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20272.39 Da        Isoelectric Point: 5.2358

>NTDB_id=91859 OC193_RS01720 WP_016797199.1 350584..351138(+) (ssb) [Vibrio crassostreae strain LMG 22240]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGGWGQPQQPQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=91859 OC193_RS01720 WP_016797199.1 350584..351138(+) (ssb) [Vibrio crassostreae strain LMG 22240]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAACGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTTGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACACGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTGCTCCTGCTCAAGGTGGCATGGGTAACAACCAACAGC
AAGGTGGTTGGGGTCAGCCACAGCAGCCACAACAACAGCAGCAATATAGTGCTCCAGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7CUH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.162

100

0.826
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.576
  ssb Neisseria meningitidis MC58

46.995

99.457

0.467
  ssb Neisseria gonorrhoeae MS11

46.995

99.457

0.467

Multiple sequence alignment