Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OC193_RS01715 Genome accession   NZ_AP025476
Coordinates   349658..350305 (-) Length   215 a.a.
NCBI ID   WP_048662718.1    Uniprot ID   A0A4R3PEZ4
Organism   Vibrio crassostreae strain LMG 22240     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 344658..355305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS01705 uvrA 345647..348478 (-) 2832 WP_048662717.1 excinuclease ABC subunit UvrA -
  OC193_RS01710 galU 348629..349501 (-) 873 WP_048657943.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OC193_RS01715 qstR 349658..350305 (-) 648 WP_048662718.1 LuxR C-terminal-related transcriptional regulator Regulator
  OC193_RS01720 ssb 350584..351138 (+) 555 WP_016797199.1 single-stranded DNA-binding protein Machinery gene
  OC193_RS01725 csrD 351300..353315 (+) 2016 WP_048662719.1 RNase E specificity factor CsrD -
  OC193_RS01730 - 353318..354760 (+) 1443 WP_048662720.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25208.33 Da        Isoelectric Point: 9.2504

>NTDB_id=91858 OC193_RS01715 WP_048662718.1 349658..350305(-) (qstR) [Vibrio crassostreae strain LMG 22240]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIILYKMTPDELMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91858 OC193_RS01715 WP_048662718.1 349658..350305(-) (qstR) [Vibrio crassostreae strain LMG 22240]
ATGAGAAAATCAAGATACGCTCGCACTTTGCATTTTCTGTGTATCGACCCAAACGATACCTATCTACATGTAAAAGAGAT
AGAAAAGCACTTATCTATTATTCTCTACAAAATGACACCCGACGAATTAATGCTAGTTGATAGAAAGCAGAGTAACCGGA
TCTTACTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGCAATATGGTCAATACCAACACGACACCAACCAATGTTGATTTAACCATTCGTGAGATT
CAGGTGATTCGCTGTCTTCAATCAGGGTCTTCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTCTATCAGATATTCCGTAAGCTTGCGGTAAAAAATAGAGTTCAAGCGATAGCATGGGCAAACCAGAACCTGC
TTGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R3PEZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment