Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VNN52_RS06125 Genome accession   NZ_CP141701
Coordinates   1213214..1215361 (-) Length   715 a.a.
NCBI ID   WP_153925280.1    Uniprot ID   -
Organism   Lactococcus petauri strain M18012501 FF2g6     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208214..1220361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN52_RS06100 (VNN52_06095) eno 1208472..1209773 (+) 1302 WP_003133057.1 surface-displayed alpha-enolase -
  VNN52_RS06105 (VNN52_06100) - 1209860..1210660 (+) 801 WP_255566821.1 tyrosine-type recombinase/integrase -
  VNN52_RS06110 (VNN52_06105) - 1210606..1210797 (+) 192 WP_255566820.1 tyrosine-type recombinase/integrase -
  VNN52_RS06115 (VNN52_06110) - 1210871..1211320 (+) 450 WP_242520602.1 hypothetical protein -
  VNN52_RS06120 (VNN52_06120) - 1211777..1213204 (-) 1428 WP_153925283.1 bacteriocin secretion accessory protein -
  VNN52_RS06125 (VNN52_06125) comA 1213214..1215361 (-) 2148 WP_153925280.1 peptide cleavage/export ABC transporter Regulator
  VNN52_RS06130 (VNN52_06130) - 1215469..1215735 (-) 267 WP_153925277.1 bacteriocin immunity protein -
  VNN52_RS06135 (VNN52_06135) - 1215803..1216102 (-) 300 WP_153925273.1 hypothetical protein -
  VNN52_RS06140 (VNN52_06140) - 1216148..1216333 (-) 186 WP_165719075.1 bacteriocin -
  VNN52_RS06145 (VNN52_06145) - 1216869..1217153 (-) 285 WP_035002336.1 hypothetical protein -
  VNN52_RS06150 (VNN52_06150) - 1217171..1217458 (-) 288 WP_035002334.1 hypothetical protein -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80734.32 Da        Isoelectric Point: 8.5587

>NTDB_id=918556 VNN52_RS06125 WP_153925280.1 1213214..1215361(-) (comA) [Lactococcus petauri strain M18012501 FF2g6]
MRFKKKYYTSQIDERDCGCAALSMVLKAYGTEQSLASLRLLAGTTIEGTSALGIKKAAEHLKFSVQAFRADSTLFDTKKL
PCPFIIHVVKEKKYPHYYVVKYSNKKHIIIADPDPTVKIRKMTWDQFYSEWTGVTLFIAPQPSYKPVKEKSESLFSFIPL
IAKQKLLVCQIIIASLLVTLINIIGSYYLQNIIDEYVPNALMKTLGIVSLGLMATYFIQQILNFAQTFLLTILGQRLAID
VILSYIRHIFQLPMSFFSTRRTGEITSRFSDANSIIDALASAILSLFLDVTIVILTGLVLGLQNMSLFFLVLFSIPLYVL
IIFIFIPLFEKQNNEVMQANSILNSSIIEDINGIETIKSLGSEEIRYQKIDREFADYMKKSFTRQKSEAFQTALKSGLQL
VLNVLILWYGATLVVSQKITLGQLITFNVLLSYFMNPLSNIINLQTKLQSAKVANHRLNEVYLVDSEFDTKTDEIILSNF
EMQLIGISYHYGFGRDILSNISLNIKENEKLTIVGMSGSGKSTLVKLLVNFFEPTQGTIILGGIDIKQMDKHQLRRIVSY
LPQHPYIFTGTVLDNLTLGVSEDISQEEIFQAVEAAEIRSDIEQLQLGYQTELSSDATTLSGGQKQRIALARTLLSPAKI
LIFDEATSNLDVITEKKILKNLFKLDKTIIFIAHRLSIAEKSDRIVVIDQGKIMEEGSHLELLSKNGFYAQLYNQ

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=918556 VNN52_RS06125 WP_153925280.1 1213214..1215361(-) (comA) [Lactococcus petauri strain M18012501 FF2g6]
ATGCGTTTTAAAAAGAAATATTATACTTCACAAATAGATGAAAGAGATTGTGGGTGTGCTGCCCTTTCCATGGTTTTAAA
AGCTTATGGTACAGAACAATCTCTTGCTTCATTACGTTTACTTGCTGGTACAACGATAGAAGGTACCTCTGCTCTAGGTA
TTAAAAAAGCCGCAGAACATTTGAAATTCAGCGTTCAAGCCTTTCGTGCAGATTCAACTCTATTTGATACAAAAAAACTT
CCTTGTCCATTTATCATTCATGTGGTTAAAGAAAAGAAATATCCTCACTACTATGTGGTTAAATATTCCAATAAAAAACA
CATCATTATTGCAGACCCAGATCCCACGGTTAAAATTCGAAAAATGACGTGGGACCAATTTTATTCTGAATGGACAGGAG
TAACTTTATTTATTGCTCCTCAACCTTCTTATAAACCAGTGAAAGAAAAATCCGAGTCTTTGTTTTCTTTTATCCCCCTC
ATCGCAAAGCAAAAGCTGCTTGTTTGTCAGATTATTATTGCTTCTCTTTTAGTCACTTTAATTAATATTATTGGCTCTTA
TTATCTTCAGAATATTATTGACGAATATGTGCCTAATGCTTTAATGAAAACTTTAGGCATTGTTTCGCTTGGATTAATGG
CAACATATTTCATCCAGCAAATTCTTAATTTTGCTCAAACTTTCTTACTTACAATACTTGGACAACGTTTAGCCATTGAT
GTTATCCTTTCCTATATCCGTCATATTTTTCAACTTCCTATGTCTTTCTTTTCTACACGAAGAACGGGAGAAATTACCAG
TCGTTTCTCTGACGCCAATTCAATTATTGATGCCCTTGCTTCTGCCATCTTATCCCTTTTCTTAGATGTCACGATTGTCA
TTCTGACAGGGCTTGTTTTAGGACTTCAAAACATGAGCTTATTCTTCCTTGTCTTGTTTTCAATTCCGCTTTATGTTCTT
ATCATTTTTATTTTTATTCCTTTATTTGAAAAACAAAATAATGAAGTCATGCAAGCAAATTCTATTTTAAATTCTTCAAT
TATTGAGGATATCAATGGAATTGAAACCATAAAATCTCTTGGGAGTGAAGAGATTCGCTATCAAAAAATAGACCGTGAAT
TTGCGGACTACATGAAAAAATCATTCACGCGTCAAAAATCCGAAGCTTTTCAAACTGCCTTGAAATCAGGATTACAACTT
GTTTTAAATGTACTTATCTTGTGGTATGGAGCCACCCTCGTGGTGAGTCAAAAAATCACCTTGGGTCAATTAATTACTTT
CAATGTCTTACTTTCATACTTTATGAATCCTCTTTCTAATATCATCAACTTACAAACTAAACTTCAATCCGCTAAAGTAG
CTAATCATCGCTTAAATGAAGTTTACTTGGTAGACAGTGAATTTGATACAAAAACAGATGAAATTATTCTTTCAAATTTT
GAGATGCAGTTGATAGGTATATCTTACCACTATGGTTTTGGTAGAGACATTCTTTCTAATATTTCACTTAATATAAAAGA
AAATGAAAAATTAACAATTGTCGGAATGAGTGGCTCAGGTAAAAGTACCCTAGTCAAATTGTTGGTTAATTTTTTCGAAC
CTACACAAGGGACTATCATTCTTGGGGGGATAGATATAAAACAAATGGATAAACATCAACTCAGAAGGATTGTCAGCTAT
CTTCCCCAACACCCCTATATCTTCACTGGAACAGTACTTGATAATTTAACCTTAGGAGTAAGTGAGGATATTTCTCAGGA
AGAAATTTTCCAAGCTGTTGAAGCTGCGGAAATTCGTTCCGATATTGAACAACTTCAATTGGGCTATCAAACGGAGCTTT
CTAGTGATGCTACAACTCTCTCTGGAGGTCAAAAACAAAGAATCGCATTGGCTCGTACCTTACTTTCTCCCGCAAAGATC
CTTATTTTTGATGAAGCAACAAGTAATCTGGACGTAATTACCGAGAAAAAAATTTTGAAAAATCTATTTAAGTTAGATAA
AACCATTATTTTTATTGCCCATCGTCTGTCTATCGCGGAAAAGAGCGACAGGATTGTTGTTATTGATCAGGGAAAAATTA
TGGAAGAAGGTAGTCATTTAGAACTGCTTTCTAAAAATGGTTTTTATGCACAACTTTATAATCAATAG

Domains

Predicted by InterProScan.

Peptidase C39 family (Peptidase_C39)

(6-142)

ABC transporter (ABC_tran)

(498-648)

ABC transporter transmembrane region (ABC_membrane)

(170-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus gordonii str. Challis substr. CH1

60.475

100

0.606
  comA Streptococcus mitis NCTC 12261

59.637

100

0.597
  comA Streptococcus mitis SK321

59.497

100

0.596
  comA/nlmT Streptococcus mutans UA159

59.275

100

0.594
  comA Streptococcus pneumoniae D39

59.218

100

0.593
  comA Streptococcus pneumoniae R6

59.218

100

0.593
  comA Streptococcus pneumoniae Rx1

59.218

100

0.593
  comA Streptococcus pneumoniae TIGR4

58.939

100

0.59