Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN52_RS02890 Genome accession   NZ_CP141701
Coordinates   588674..589090 (-) Length   138 a.a.
NCBI ID   WP_019291446.1    Uniprot ID   -
Organism   Lactococcus petauri strain M18012501 FF2g6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583674..594090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN52_RS02870 (VNN52_02865) - 585956..586840 (+) 885 WP_019291442.1 RluA family pseudouridine synthase -
  VNN52_RS02875 (VNN52_02870) - 586911..587756 (-) 846 WP_019291443.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VNN52_RS02880 (VNN52_02875) comGF 587988..588428 (-) 441 WP_019291444.1 competence type IV pilus minor pilin ComGF -
  VNN52_RS02885 (VNN52_02880) comGE 588409..588708 (-) 300 WP_019291445.1 competence type IV pilus minor pilin ComGE -
  VNN52_RS02890 (VNN52_02885) comGD 588674..589090 (-) 417 WP_019291446.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN52_RS02895 (VNN52_02890) comYC 589065..589370 (-) 306 WP_153924350.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN52_RS02900 (VNN52_02895) comGB 589389..590408 (-) 1020 WP_255566838.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN52_RS02905 (VNN52_02900) comGA 590347..591291 (-) 945 WP_019291447.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN52_RS02910 (VNN52_02905) rpsU 591477..591653 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN52_RS02915 (VNN52_02910) guaB 591779..593260 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15743.32 Da        Isoelectric Point: 9.9391

>NTDB_id=918538 VNN52_RS02890 WP_019291446.1 588674..589090(-) (comGD) [Lactococcus petauri strain M18012501 FF2g6]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSAKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKNISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918538 VNN52_RS02890 WP_019291446.1 588674..589090(-) (comGD) [Lactococcus petauri strain M18012501 FF2g6]
ATGCAAAATGTAATGTATCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGCCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAAACATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

39.535

93.478

0.37
  comGD/cglD Streptococcus mitis NCTC 12261

38.462

94.203

0.362