Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN27_RS02875 Genome accession   NZ_CP141700
Coordinates   590997..591413 (-) Length   138 a.a.
NCBI ID   WP_019293010.1    Uniprot ID   -
Organism   Lactococcus petauri strain R22-25 IC35     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585997..596413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN27_RS02855 (VNN27_02855) - 588279..589163 (+) 885 WP_086582775.1 RluA family pseudouridine synthase -
  VNN27_RS02860 (VNN27_02860) - 589234..590079 (-) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN27_RS02865 (VNN27_02865) comGF 590311..590751 (-) 441 WP_019336002.1 competence type IV pilus minor pilin ComGF -
  VNN27_RS02870 (VNN27_02870) comGE 590732..590965 (-) 234 WP_346350127.1 competence type IV pilus minor pilin ComGE -
  VNN27_RS02875 (VNN27_02875) comGD 590997..591413 (-) 417 WP_019293010.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN27_RS02880 (VNN27_02880) comYC 591388..591693 (-) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN27_RS02885 (VNN27_02885) comGB 591712..592731 (-) 1020 WP_268864970.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN27_RS02890 (VNN27_02890) comGA 592670..593614 (-) 945 WP_019293012.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN27_RS02895 (VNN27_02895) rpsU 593800..593976 (-) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN27_RS02900 (VNN27_02900) guaB 594102..595583 (-) 1482 WP_003133714.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15758.38 Da        Isoelectric Point: 9.9391

>NTDB_id=918492 VNN27_RS02875 WP_019293010.1 590997..591413(-) (comGD) [Lactococcus petauri strain R22-25 IC35]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918492 VNN27_RS02875 WP_019293010.1 590997..591413(-) (comGD) [Lactococcus petauri strain R22-25 IC35]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362