Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN27_RS01180 Genome accession   NZ_CP141700
Coordinates   239796..240800 (-) Length   334 a.a.
NCBI ID   WP_252170170.1    Uniprot ID   -
Organism   Lactococcus petauri strain R22-25 IC35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 234796..245800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN27_RS01165 (VNN27_01165) - 236318..237226 (-) 909 WP_019292043.1 peptidyl-prolyl cis-trans isomerase -
  VNN27_RS01170 (VNN27_01170) - 237324..238007 (-) 684 WP_270345283.1 O-methyltransferase -
  VNN27_RS01175 (VNN27_01175) pepF 238007..239812 (-) 1806 WP_346350068.1 oligoendopeptidase F Regulator
  VNN27_RS01180 (VNN27_01180) coiA 239796..240800 (-) 1005 WP_252170170.1 competence protein CoiA family protein Machinery gene
  VNN27_RS01185 (VNN27_01185) - 240876..241976 (-) 1101 WP_019293088.1 YdcF family protein -
  VNN27_RS01190 (VNN27_01190) - 242053..243474 (-) 1422 WP_019292048.1 NCS2 family permease -
  VNN27_RS01195 (VNN27_01195) - 243835..244659 (+) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  VNN27_RS01200 (VNN27_01200) - 244716..245420 (-) 705 WP_346350069.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39879.76 Da        Isoelectric Point: 8.9884

>NTDB_id=918473 VNN27_RS01180 WP_252170170.1 239796..240800(-) (coiA) [Lactococcus petauri strain R22-25 IC35]
MLIALDKDGKTINLLDNSSISGPFYCPACKSPLRLKKGKIKIPHFAHISVKNCDSWSENESAQHLGLKLSLYQWFKKKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKNNLSSLQKNLLYYSAVRGF
YFWELDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQENLLELLRQPFREGENLSLDAPKQEELQLFVQKQLYYQVPKWL
KMQEKYYEQGKNLLDLNWNKSYWSPPGLNLLTFDFSDDTRESFFQVDTPLEKYYHSFYESFQLQEHEKLHTPSFYAIIKD
KNKVKNGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918473 VNN27_RS01180 WP_252170170.1 239796..240800(-) (coiA) [Lactococcus petauri strain R22-25 IC35]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTCCTTGACAATTCTTCAATTAGTGGCCCTTTTTATTGCCC
AGCCTGTAAGTCGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCTCACATATCCGTAAAAAATTGTG
ACTCTTGGAGCGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTGTATCAATGGTTTAAGAAAAAAGAGAAA
GTTGAGTTGGAAAAGTATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTAAATGATAAACTTGCTATTGAAATACA
GTGTTCGCCGCTTTCTTTGCAACGTTTAGAAGAGAGAACGGTAAGTTACAAAGAAAAAGGATATTATGTCCTTTGGCTTC
AAGGAAGGGACTTATGGCTTAAAAATAACCTATCATCTTTGCAGAAAAATTTGCTCTATTATTCAGCAGTGAGAGGTTTT
TATTTTTGGGAATTAGACTGGAACAGAAAAAAACTACGGTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTTACTGAAGAGTTTGACTTCTTTCAAGAGAATCTCTTAGAGCTCTTACGCCAGCCCTTTCGAGAAGGAGAAAATC
TTAGTTTAGATGCTCCAAAACAGGAAGAGTTACAGTTGTTTGTTCAGAAACAACTGTATTATCAAGTGCCAAAATGGCTT
AAAATGCAAGAAAAATATTATGAACAAGGAAAAAATTTGCTAGACCTCAATTGGAATAAGAGCTACTGGAGTCCTCCAGG
CTTAAACTTATTGACCTTTGACTTTTCTGATGATACGAGAGAAAGCTTTTTTCAAGTAGATACTCCCTTGGAAAAATATT
ATCACAGCTTCTATGAAAGTTTTCAGTTACAAGAACACGAAAAACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

40.549

98.204

0.398
  coiA Streptococcus pneumoniae D39

40.549

98.204

0.398
  coiA Streptococcus pneumoniae R6

40.549

98.204

0.398
  coiA Streptococcus pneumoniae TIGR4

40.549

98.204

0.398
  coiA Streptococcus mitis NCTC 12261

39.634

98.204

0.389