Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   VNN27_RS01175 Genome accession   NZ_CP141700
Coordinates   238007..239812 (-) Length   601 a.a.
NCBI ID   WP_346350068.1    Uniprot ID   -
Organism   Lactococcus petauri strain R22-25 IC35     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 233007..244812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN27_RS01160 (VNN27_01160) alaS 233450..236068 (-) 2619 WP_252170172.1 alanine--tRNA ligase -
  VNN27_RS01165 (VNN27_01165) - 236318..237226 (-) 909 WP_019292043.1 peptidyl-prolyl cis-trans isomerase -
  VNN27_RS01170 (VNN27_01170) - 237324..238007 (-) 684 WP_270345283.1 O-methyltransferase -
  VNN27_RS01175 (VNN27_01175) pepF 238007..239812 (-) 1806 WP_346350068.1 oligoendopeptidase F Regulator
  VNN27_RS01180 (VNN27_01180) coiA 239796..240800 (-) 1005 WP_252170170.1 competence protein CoiA family protein Machinery gene
  VNN27_RS01185 (VNN27_01185) - 240876..241976 (-) 1101 WP_019293088.1 YdcF family protein -
  VNN27_RS01190 (VNN27_01190) - 242053..243474 (-) 1422 WP_019292048.1 NCS2 family permease -
  VNN27_RS01195 (VNN27_01195) - 243835..244659 (+) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69689.32 Da        Isoelectric Point: 4.8155

>NTDB_id=918472 VNN27_RS01175 WP_346350068.1 238007..239812(-) (pepF) [Lactococcus petauri strain R22-25 IC35]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGMVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLPLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKSEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAKAIVNGGPDAREKYLAYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=918472 VNN27_RS01175 WP_346350068.1 238007..239812(-) (pepF) [Lactococcus petauri strain R22-25 IC35]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGATGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGAGCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACACGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAAATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAATCAGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCTAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTCATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGGTTTGCTATTTTAAACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTATGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGCTTTGCCGCAGCAACTTATCTTG
CTAAGGCTATCGTTAATGGTGGCCCAGACGCGCGTGAAAAATACCTCGCTTATCTCAAAGCAGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.559

100

0.646