Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VNN38_RS01235 Genome accession   NZ_CP141697
Coordinates   245466..246470 (-) Length   334 a.a.
NCBI ID   WP_019293087.1    Uniprot ID   A0AAJ2IT95
Organism   Lactococcus petauri strain R21-77-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 240466..251470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS01220 (VNN38_01220) - 241988..242896 (-) 909 WP_019293085.1 peptidyl-prolyl cis-trans isomerase -
  VNN38_RS01225 (VNN38_01225) - 242994..243677 (-) 684 WP_019292044.1 O-methyltransferase -
  VNN38_RS01230 (VNN38_01230) pepF 243677..245482 (-) 1806 WP_064305291.1 oligoendopeptidase F Regulator
  VNN38_RS01235 (VNN38_01235) coiA 245466..246470 (-) 1005 WP_019293087.1 competence protein CoiA family protein Machinery gene
  VNN38_RS01240 (VNN38_01240) - 246546..247646 (-) 1101 WP_019293088.1 YdcF family protein -
  VNN38_RS01245 (VNN38_01245) - 247724..249145 (-) 1422 WP_019293089.1 NCS2 family permease -
  VNN38_RS01250 (VNN38_01250) - 249509..250333 (+) 825 WP_019293090.1 Cof-type HAD-IIB family hydrolase -
  VNN38_RS01255 (VNN38_01255) - 250390..251094 (-) 705 WP_019293091.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39807.64 Da        Isoelectric Point: 8.6076

>NTDB_id=918338 VNN38_RS01235 WP_019293087.1 245466..246470(-) (coiA) [Lactococcus petauri strain R21-77-2]
MLIALDKDGKTINLLDNSSISGPFYCPACKSPLRLKKGKIKIPHFAHISVKNCDSWSENESAQHLGLKLSLYQWFKKKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKNNLSSLQKNLLYYSAVRGF
YFWELDWNRKKLRLKSLVYQDLKGRPIYLTEEFDFFQENLLELLRQPFREGEDLSLDAPKQEELQLFVQKQLYYQVPKWL
KMQEKYYEQGKNLLDLNWNKSYWSPPGLNLLTFDFSDDTPESFFQVDTPLEKYYHSFYESFQLQEHEKLHTPSFYAIIKD
KNKVKNGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=918338 VNN38_RS01235 WP_019293087.1 245466..246470(-) (coiA) [Lactococcus petauri strain R21-77-2]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTCCTTGACAATTCTTCAATTAGTGGCCCTTTTTATTGCCC
AGCCTGTAAGTCGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCTCACATATCCGTAAAAAATTGTG
ACTCTTGGAGCGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGTTTGTATCAATGGTTTAAGAAAAAAGAGAAA
GTTGAGTTGGAAAAGTATGTGCCAGAAATTAAGCAAACGGCTGATTTGTTAGTAAATGATAAACTTGCTATTGAAATACA
GTGTTCGCCGCTTTCTTTGCAACGTTTAGAAGAGAGAACGGTAAGTTACAAAGAAAAAGGATATTATGTCCTTTGGCTTC
AAGGAAGGGACTTATGGCTTAAGAATAACCTATCATCTTTGCAGAAAAATTTGCTCTATTATTCAGCAGTGAGAGGTTTT
TATTTTTGGGAATTAGACTGGAACAGAAAAAAACTACGGTTGAAATCATTGGTTTATCAAGATTTGAAAGGACGACCGAT
TTATCTTACTGAAGAGTTTGACTTCTTTCAAGAGAATCTCTTAGAGCTCTTACGCCAACCCTTTCGAGAAGGAGAAGATC
TTAGTTTAGATGCTCCAAAACAGGAAGAGTTACAGTTGTTTGTTCAGAAACAACTGTATTATCAAGTGCCAAAATGGCTT
AAAATGCAAGAAAAATATTATGAACAAGGAAAAAATTTGCTAGACCTCAATTGGAATAAGAGCTACTGGAGTCCTCCAGG
CTTAAACTTATTGACCTTTGACTTTTCCGATGATACGCCAGAAAGCTTTTTTCAAGTAGATACTCCCTTGGAAAAATATT
ATCACAGCTTCTATGAAAGTTTTCAGTTACAAGAACACGAAAAACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.524

98.204

0.506
  coiA Streptococcus pneumoniae Rx1

40.244

98.204

0.395
  coiA Streptococcus pneumoniae D39

40.244

98.204

0.395
  coiA Streptococcus pneumoniae R6

40.244

98.204

0.395
  coiA Streptococcus pneumoniae TIGR4

40.244

98.204

0.395
  coiA Streptococcus mitis NCTC 12261

39.329

98.204

0.386